Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SMARCA1P28370 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC17.02■□□□□ 0.32
SMARCA1P28370 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.32
SMARCA1P28370 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC17.02■□□□□ 0.32
SMARCA1P28370 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SMARCA1P28370 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SMARCA1P28370 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SMARCA1P28370 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SMARCA1P28370 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.02■□□□□ 0.32
SMARCA1P28370 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC17.02■□□□□ 0.32
SMARCA1P28370 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SMARCA1P28370 AC006033.1-201ENST00000440505 426 ntBASIC17.02■□□□□ 0.32
SMARCA1P28370 KLF2P1-201ENST00000447438 1042 ntBASIC17.02■□□□□ 0.32
SMARCA1P28370 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SMARCA1P28370 AC104306.2-201ENST00000451877 341 ntBASIC17.02■□□□□ 0.32
SMARCA1P28370 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC17.02■□□□□ 0.32
SMARCA1P28370 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SMARCA1P28370 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.02■□□□□ 0.32
SMARCA1P28370 MIR4538-201ENST00000581377 78 ntBASIC17.02■□□□□ 0.32
SMARCA1P28370 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC17.02■□□□□ 0.32
SMARCA1P28370 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.02■□□□□ 0.32
SMARCA1P28370 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.02■□□□□ 0.32
SMARCA1P28370 ABBA01031663.1-201ENST00000635630 790 ntBASIC17.02■□□□□ 0.32
SMARCA1P28370 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
SMARCA1P28370 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.02■□□□□ 0.31
SMARCA1P28370 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
SMARCA1P28370 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SMARCA1P28370 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
SMARCA1P28370 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
SMARCA1P28370 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.02■□□□□ 0.31
SMARCA1P28370 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SMARCA1P28370 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SMARCA1P28370 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.01■□□□□ 0.31
SMARCA1P28370 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SMARCA1P28370 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.01■□□□□ 0.31
SMARCA1P28370 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
SMARCA1P28370 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.01■□□□□ 0.31
SMARCA1P28370 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.01■□□□□ 0.31
SMARCA1P28370 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.01■□□□□ 0.31
SMARCA1P28370 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.01■□□□□ 0.31
SMARCA1P28370 AL022328.3-201ENST00000607943 679 ntBASIC17.01■□□□□ 0.31
SMARCA1P28370 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.01■□□□□ 0.31
SMARCA1P28370 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
SMARCA1P28370 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.01■□□□□ 0.31
SMARCA1P28370 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.01■□□□□ 0.31
SMARCA1P28370 AC006504.5-208ENST00000588784 2401 ntBASIC17.01■□□□□ 0.31
SMARCA1P28370 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SMARCA1P28370 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMARCA1P28370 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17■□□□□ 0.31
SMARCA1P28370 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC17■□□□□ 0.31
SMARCA1P28370 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17■□□□□ 0.31
SMARCA1P28370 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SMARCA1P28370 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
SMARCA1P28370 DPM3-202ENST00000368399 517 ntBASIC17■□□□□ 0.31
SMARCA1P28370 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17■□□□□ 0.31
SMARCA1P28370 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC17■□□□□ 0.31
SMARCA1P28370 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17■□□□□ 0.31
SMARCA1P28370 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
SMARCA1P28370 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC17■□□□□ 0.31
SMARCA1P28370 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SMARCA1P28370 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC17■□□□□ 0.31
SMARCA1P28370 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 R3HDM2P2-201ENST00000401880 2116 ntBASIC17■□□□□ 0.31
SMARCA1P28370 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17■□□□□ 0.31
SMARCA1P28370 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC17■□□□□ 0.31
SMARCA1P28370 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SMARCA1P28370 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17■□□□□ 0.31
SMARCA1P28370 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17■□□□□ 0.31
SMARCA1P28370 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.99■□□□□ 0.31
SMARCA1P28370 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMARCA1P28370 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMARCA1P28370 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms