Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.93□□□□□ -0.02
MSH3P20585 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.92□□□□□ -0.02
MSH3P20585 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
MSH3P20585 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.92□□□□□ -0.02
MSH3P20585 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.92□□□□□ -0.02
MSH3P20585 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.92□□□□□ -0.02
MSH3P20585 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.92□□□□□ -0.02
MSH3P20585 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.92□□□□□ -0.02
MSH3P20585 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.92□□□□□ -0.02
MSH3P20585 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.92□□□□□ -0.02
MSH3P20585 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 AC244669.2-201ENST00000612320 853 ntBASIC14.92□□□□□ -0.02
MSH3P20585 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.92□□□□□ -0.02
MSH3P20585 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.92□□□□□ -0.02
MSH3P20585 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.92□□□□□ -0.02
MSH3P20585 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.92□□□□□ -0.02
MSH3P20585 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.92□□□□□ -0.02
MSH3P20585 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
MSH3P20585 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSH3P20585 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.91□□□□□ -0.02
MSH3P20585 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
MSH3P20585 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.91□□□□□ -0.02
MSH3P20585 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 RNA5SP486-201ENST00000515961 83 ntBASIC14.91□□□□□ -0.02
MSH3P20585 AL512343.1-201ENST00000605837 169 ntBASIC14.91□□□□□ -0.02
MSH3P20585 AC023090.2-201ENST00000625182 2110 ntBASIC14.91□□□□□ -0.02
MSH3P20585 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.91□□□□□ -0.02
MSH3P20585 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.91□□□□□ -0.02
MSH3P20585 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.91□□□□□ -0.02
MSH3P20585 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.91□□□□□ -0.02
MSH3P20585 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
MSH3P20585 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.91□□□□□ -0.02
MSH3P20585 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSH3P20585 SNX18-202ENST00000343017 3140 ntBASIC14.9□□□□□ -0.02
MSH3P20585 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
MSH3P20585 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
MSH3P20585 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.9□□□□□ -0.02
MSH3P20585 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
MSH3P20585 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 FAM197Y7-201ENST00000432892 766 ntBASIC14.9□□□□□ -0.02
MSH3P20585 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.9□□□□□ -0.02
MSH3P20585 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.9□□□□□ -0.02
MSH3P20585 KLF2P4-201ENST00000451959 1225 ntBASIC14.9□□□□□ -0.02
MSH3P20585 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.9□□□□□ -0.02
MSH3P20585 HILS1-202ENST00000545329 423 ntBASIC14.9□□□□□ -0.02
MSH3P20585 KRT90P-201ENST00000549264 1064 ntBASIC14.9□□□□□ -0.02
MSH3P20585 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
MSH3P20585 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.9□□□□□ -0.02
MSH3P20585 ECM1P1-201ENST00000604092 1279 ntBASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms