Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.56■□□□□ 0.24
TPM1P09493 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC16.56■□□□□ 0.24
TPM1P09493 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.56■□□□□ 0.24
TPM1P09493 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.56■□□□□ 0.24
TPM1P09493 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.56■□□□□ 0.24
TPM1P09493 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC16.56■□□□□ 0.24
TPM1P09493 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
TPM1P09493 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.56■□□□□ 0.24
TPM1P09493 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
TPM1P09493 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 USP31-203ENST00000567975 2142 ntTSL 2 BASIC16.55■□□□□ 0.24
TPM1P09493 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC16.55■□□□□ 0.24
TPM1P09493 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
TPM1P09493 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC16.55■□□□□ 0.24
TPM1P09493 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
TPM1P09493 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.55■□□□□ 0.24
TPM1P09493 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.55■□□□□ 0.24
TPM1P09493 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TPM1P09493 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.55■□□□□ 0.24
TPM1P09493 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.55■□□□□ 0.24
TPM1P09493 RN7SL618P-201ENST00000477850 296 ntBASIC16.55■□□□□ 0.24
TPM1P09493 POLD2P1-201ENST00000511220 997 ntBASIC16.55■□□□□ 0.24
TPM1P09493 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.55■□□□□ 0.24
TPM1P09493 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.55■□□□□ 0.24
TPM1P09493 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.55■□□□□ 0.24
TPM1P09493 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 AP001059.3-201ENST00000619053 235 ntBASIC16.55■□□□□ 0.24
TPM1P09493 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
TPM1P09493 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
TPM1P09493 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC16.55■□□□□ 0.24
TPM1P09493 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
TPM1P09493 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
TPM1P09493 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.55■□□□□ 0.24
TPM1P09493 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
TPM1P09493 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC16.55■□□□□ 0.24
TPM1P09493 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
TPM1P09493 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 GALC-206ENST00000544807 2528 ntTSL 2 BASIC16.55■□□□□ 0.24
TPM1P09493 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TPM1P09493 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC16.55■□□□□ 0.24
TPM1P09493 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
TPM1P09493 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
TPM1P09493 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TPM1P09493 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
TPM1P09493 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC16.54■□□□□ 0.24
TPM1P09493 AC089987.1-201ENST00000551654 2209 ntBASIC16.54■□□□□ 0.24
TPM1P09493 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM1P09493 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC16.54■□□□□ 0.24
TPM1P09493 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC16.54■□□□□ 0.24
TPM1P09493 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
TPM1P09493 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.54■□□□□ 0.24
TPM1P09493 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.54■□□□□ 0.24
TPM1P09493 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.54■□□□□ 0.24
TPM1P09493 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.54■□□□□ 0.24
TPM1P09493 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 AC023141.5-201ENST00000458585 616 ntBASIC16.54■□□□□ 0.24
TPM1P09493 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms