Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.61■□□□□ 0.41
HMGB1P09429 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 COX5BP8-201ENST00000416911 349 ntBASIC17.61■□□□□ 0.41
HMGB1P09429 NME2P1-201ENST00000426182 414 ntBASIC17.61■□□□□ 0.41
HMGB1P09429 AC016694.1-201ENST00000434179 700 ntBASIC17.61■□□□□ 0.41
HMGB1P09429 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 BCRP2-202ENST00000447763 634 ntBASIC17.61■□□□□ 0.41
HMGB1P09429 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.61■□□□□ 0.41
HMGB1P09429 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 BCRP6-201ENST00000510112 632 ntBASIC17.61■□□□□ 0.41
HMGB1P09429 BCRP7-201ENST00000511549 544 ntBASIC17.61■□□□□ 0.41
HMGB1P09429 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.61■□□□□ 0.41
HMGB1P09429 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.61■□□□□ 0.41
HMGB1P09429 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
HMGB1P09429 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HMGB1P09429 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.61■□□□□ 0.41
HMGB1P09429 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC17.61■□□□□ 0.41
HMGB1P09429 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGB1P09429 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.61■□□□□ 0.41
HMGB1P09429 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HMGB1P09429 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGB1P09429 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.6■□□□□ 0.41
HMGB1P09429 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC17.6■□□□□ 0.41
HMGB1P09429 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGB1P09429 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGB1P09429 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.6■□□□□ 0.41
HMGB1P09429 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
HMGB1P09429 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
HMGB1P09429 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
HMGB1P09429 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGB1P09429 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
HMGB1P09429 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGB1P09429 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGB1P09429 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGB1P09429 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HMGB1P09429 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGB1P09429 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
HMGB1P09429 MYADML-201ENST00000474610 2147 ntBASIC17.59■□□□□ 0.41
HMGB1P09429 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.59■□□□□ 0.41
HMGB1P09429 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 INE2-201ENST00000630399 1874 ntBASIC17.59■□□□□ 0.41
HMGB1P09429 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.59■□□□□ 0.41
HMGB1P09429 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HMGB1P09429 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
HMGB1P09429 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGB1P09429 RN7SKP175-201ENST00000408472 289 ntBASIC17.59■□□□□ 0.41
HMGB1P09429 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.59■□□□□ 0.41
HMGB1P09429 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC17.59■□□□□ 0.41
HMGB1P09429 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGB1P09429 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
HMGB1P09429 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 CR383656.12-201ENST00000549567 513 ntBASIC17.59■□□□□ 0.41
HMGB1P09429 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 AC106820.3-201ENST00000561653 397 ntBASIC17.59■□□□□ 0.41
HMGB1P09429 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.59■□□□□ 0.41
HMGB1P09429 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.59■□□□□ 0.41
HMGB1P09429 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 IGHV3-72-202ENST00000621503 303 ntBASIC17.59■□□□□ 0.41
HMGB1P09429 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HMGB1P09429 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms