Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
APOBP04114 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC8.97□□□□□ -0.97
APOBP04114 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
APOBP04114 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
APOBP04114 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC8.97□□□□□ -0.97
APOBP04114 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC8.97□□□□□ -0.97
APOBP04114 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC8.97□□□□□ -0.97
APOBP04114 AC104961.1-201ENST00000427605 771 ntBASIC8.97□□□□□ -0.97
APOBP04114 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC8.97□□□□□ -0.97
APOBP04114 VENTXP4-201ENST00000449029 958 ntBASIC8.97□□□□□ -0.97
APOBP04114 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC8.97□□□□□ -0.97
APOBP04114 MIR4265-201ENST00000582152 99 ntBASIC8.97□□□□□ -0.97
APOBP04114 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC8.97□□□□□ -0.97
APOBP04114 LINC00244-201ENST00000625073 613 ntBASIC8.97□□□□□ -0.97
APOBP04114 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC8.97□□□□□ -0.97
APOBP04114 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC8.97□□□□□ -0.97
APOBP04114 AL136172.1-201ENST00000598590 1394 ntBASIC8.97□□□□□ -0.97
APOBP04114 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
APOBP04114 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
APOBP04114 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC8.97□□□□□ -0.97
APOBP04114 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
APOBP04114 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
APOBP04114 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC8.97□□□□□ -0.97
APOBP04114 AL157823.1-201ENST00000403727 628 ntBASIC8.97□□□□□ -0.97
APOBP04114 EEF1DP2-201ENST00000433698 843 ntBASIC8.97□□□□□ -0.97
APOBP04114 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
APOBP04114 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC8.97□□□□□ -0.97
APOBP04114 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC8.97□□□□□ -0.97
APOBP04114 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC8.97□□□□□ -0.97
APOBP04114 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC8.97□□□□□ -0.97
APOBP04114 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
APOBP04114 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
APOBP04114 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC8.96□□□□□ -0.97
APOBP04114 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.97
APOBP04114 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC8.96□□□□□ -0.97
APOBP04114 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC8.96□□□□□ -0.97
APOBP04114 KRT8P6-201ENST00000399259 1207 ntBASIC8.96□□□□□ -0.97
APOBP04114 AC092573.1-201ENST00000433054 884 ntBASIC8.96□□□□□ -0.97
APOBP04114 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC8.96□□□□□ -0.97
APOBP04114 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC8.96□□□□□ -0.97
APOBP04114 AC084262.1-201ENST00000567818 751 ntBASIC8.96□□□□□ -0.97
APOBP04114 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC8.96□□□□□ -0.97
APOBP04114 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC8.96□□□□□ -0.97
APOBP04114 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
APOBP04114 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC8.96□□□□□ -0.98
APOBP04114 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC8.96□□□□□ -0.98
APOBP04114 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC8.96□□□□□ -0.98
APOBP04114 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC8.96□□□□□ -0.98
APOBP04114 RPL5P21-201ENST00000404620 815 ntBASIC8.96□□□□□ -0.98
APOBP04114 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC8.96□□□□□ -0.98
APOBP04114 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC8.96□□□□□ -0.98
APOBP04114 PHF23-213ENST00000613632 850 ntTSL 5 BASIC8.96□□□□□ -0.98
APOBP04114 AC113385.2-201ENST00000614465 762 ntBASIC8.96□□□□□ -0.98
APOBP04114 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC8.96□□□□□ -0.98
APOBP04114 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 AC004923.3-201ENST00000527532 355 ntBASIC8.96□□□□□ -0.98
APOBP04114 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 AP003040.1-201ENST00000532044 1024 ntBASIC8.96□□□□□ -0.98
APOBP04114 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC8.96□□□□□ -0.98
APOBP04114 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC8.96□□□□□ -0.98
APOBP04114 EEF1DP7-201ENST00000580496 513 ntBASIC8.96□□□□□ -0.98
APOBP04114 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.98
APOBP04114 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC8.96□□□□□ -0.98
APOBP04114 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC8.96□□□□□ -0.98
APOBP04114 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC8.96□□□□□ -0.98
APOBP04114 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
APOBP04114 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms