Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MSRA-203ENST00000441698 788 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA1O95477 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA1O95477 AC104784.1-201ENST00000473096 294 ntBASIC12.6□□□□□ -0.39
ABCA1O95477 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA1O95477 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC12.6□□□□□ -0.39
ABCA1O95477 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA1O95477 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC12.6□□□□□ -0.39
ABCA1O95477 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
ABCA1O95477 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC12.6□□□□□ -0.39
ABCA1O95477 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA1O95477 AC004899.1-201ENST00000424687 1714 ntBASIC12.6□□□□□ -0.39
ABCA1O95477 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
ABCA1O95477 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.6□□□□□ -0.39
ABCA1O95477 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.6□□□□□ -0.39
ABCA1O95477 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC12.6□□□□□ -0.39
ABCA1O95477 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.6□□□□□ -0.39
ABCA1O95477 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ABCA1O95477 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
ABCA1O95477 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.59□□□□□ -0.39
ABCA1O95477 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
ABCA1O95477 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 HNRNPA1P63-201ENST00000427917 963 ntBASIC12.59□□□□□ -0.39
ABCA1O95477 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 AC234782.1-201ENST00000451950 919 ntBASIC12.59□□□□□ -0.39
ABCA1O95477 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
ABCA1O95477 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC12.59□□□□□ -0.39
ABCA1O95477 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC12.59□□□□□ -0.39
ABCA1O95477 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC12.59□□□□□ -0.39
ABCA1O95477 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.59□□□□□ -0.39
ABCA1O95477 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC12.59□□□□□ -0.39
ABCA1O95477 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC12.59□□□□□ -0.39
ABCA1O95477 AC126177.1-201ENST00000547829 2218 ntBASIC12.59□□□□□ -0.39
ABCA1O95477 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
ABCA1O95477 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC12.59□□□□□ -0.39
ABCA1O95477 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
ABCA1O95477 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
ABCA1O95477 AC117489.1-201ENST00000625169 3217 ntBASIC12.59□□□□□ -0.39
ABCA1O95477 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.59□□□□□ -0.39
ABCA1O95477 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC12.59□□□□□ -0.39
ABCA1O95477 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC12.59□□□□□ -0.39
ABCA1O95477 AL023803.2-201ENST00000620080 638 ntBASIC12.59□□□□□ -0.39
ABCA1O95477 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC12.59□□□□□ -0.39
ABCA1O95477 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC12.59□□□□□ -0.39
ABCA1O95477 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
ABCA1O95477 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
ABCA1O95477 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
ABCA1O95477 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
ABCA1O95477 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
ABCA1O95477 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
ABCA1O95477 MYO15B-237ENST00000642007 4893 ntBASIC12.59□□□□□ -0.39
ABCA1O95477 KCP-203ENST00000610776 5108 ntTSL 5 BASIC12.58□□□□□ -0.39
ABCA1O95477 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
ABCA1O95477 SRC-202ENST00000373558 4304 ntTSL 5 BASIC12.58□□□□□ -0.39
ABCA1O95477 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
ABCA1O95477 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.39
ABCA1O95477 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC12.58□□□□□ -0.4
ABCA1O95477 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA1O95477 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA1O95477 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC12.58□□□□□ -0.4
ABCA1O95477 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA1O95477 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
ABCA1O95477 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms