Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 KRT18P58-201ENST00000527480 1120 ntBASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 AL512361.1-201ENST00000554200 418 ntBASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 AP001059.3-201ENST00000619053 235 ntBASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 AL109936.8-201ENST00000641772 604 ntBASIC10.46□□□□□ -0.73
UBE2D4Q9Y2X8 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 DKFZP434A062-201ENST00000573103 5021 ntBASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
UBE2D4Q9Y2X8 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 MIR193BHG-211ENST00000641433 5365 ntBASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 TCAM1P-207ENST00000485295 1537 ntBASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 SUN1-204ENST00000403868 978 ntTSL 2 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 HLA-K-203ENST00000430151 1046 ntBASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 AC023141.5-201ENST00000458585 616 ntBASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC10.45□□□□□ -0.74
UBE2D4Q9Y2X8 HLA-V-204ENST00000476601 1289 ntBASIC10.45□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms