Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 KRT18P13-201ENST00000400056 1290 ntBASIC16.2■□□□□ 0.18
CCDC42Q96M95 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 AC092580.3-201ENST00000430932 139 ntBASIC16.2■□□□□ 0.18
CCDC42Q96M95 AC004967.1-201ENST00000453589 447 ntBASIC16.2■□□□□ 0.18
CCDC42Q96M95 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 AC097493.3-201ENST00000509725 367 ntBASIC16.2■□□□□ 0.18
CCDC42Q96M95 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 AC015911.4-201ENST00000588022 1070 ntBASIC16.2■□□□□ 0.18
CCDC42Q96M95 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 AL590560.3-201ENST00000623350 461 ntBASIC16.2■□□□□ 0.18
CCDC42Q96M95 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 GOLGA8VP-201ENST00000559009 1798 ntBASIC16.19■□□□□ 0.18
CCDC42Q96M95 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 BTBD7P1-201ENST00000447253 1453 ntBASIC16.19■□□□□ 0.18
CCDC42Q96M95 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 AC026410.3-201ENST00000514280 936 ntBASIC16.19■□□□□ 0.18
CCDC42Q96M95 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 AL158211.3-201ENST00000607385 239 ntBASIC16.19■□□□□ 0.18
CCDC42Q96M95 AL391069.4-201ENST00000609583 481 ntBASIC16.19■□□□□ 0.18
CCDC42Q96M95 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC42Q96M95 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 KRT8P14-201ENST00000414254 1442 ntBASIC16.19■□□□□ 0.18
CCDC42Q96M95 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CCDC42Q96M95 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms