Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 AL390955.2-201ENST00000603032 514 ntBASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
DEPDC4Q8N2C3 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 TERF1P3-201ENST00000505638 1227 ntBASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 AP003400.6-201ENST00000624698 740 ntBASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 AC100757.3-201ENST00000622361 1406 ntBASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DEPDC4Q8N2C3 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 AC007787.1-201ENST00000588095 1583 ntBASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
DEPDC4Q8N2C3 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms