Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 BAATP1-201ENST00000412284 1225 ntBASIC13.32□□□□□ -0.28
SKA3Q8IX90 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 NME2P1-201ENST00000426182 414 ntBASIC13.32□□□□□ -0.28
SKA3Q8IX90 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 AC022137.2-201ENST00000503482 481 ntBASIC13.32□□□□□ -0.28
SKA3Q8IX90 KRT18P25-201ENST00000508931 1278 ntBASIC13.32□□□□□ -0.28
SKA3Q8IX90 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 PTP4A1P2-201ENST00000546033 454 ntBASIC13.32□□□□□ -0.28
SKA3Q8IX90 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 MIR5189-201ENST00000577370 114 ntBASIC13.32□□□□□ -0.28
SKA3Q8IX90 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 CICP20-201ENST00000443330 2801 ntBASIC13.32□□□□□ -0.28
SKA3Q8IX90 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 AC134312.5-201ENST00000568031 1313 ntBASIC13.32□□□□□ -0.28
SKA3Q8IX90 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.32□□□□□ -0.28
SKA3Q8IX90 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SKA3Q8IX90 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 LRRC59-203ENST00000576448 1531 ntBASIC13.31□□□□□ -0.28
SKA3Q8IX90 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 AL512384.1-201ENST00000406683 331 ntBASIC13.31□□□□□ -0.28
SKA3Q8IX90 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 COX5BP8-201ENST00000416911 349 ntBASIC13.31□□□□□ -0.28
SKA3Q8IX90 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 AC007389.4-201ENST00000454674 793 ntBASIC13.31□□□□□ -0.28
SKA3Q8IX90 AC022616.1-201ENST00000518688 554 ntBASIC13.31□□□□□ -0.28
SKA3Q8IX90 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 PIGL-212ENST00000581006 554 ntTSL 4 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 AC087386.2-201ENST00000623212 4637 ntBASIC13.31□□□□□ -0.28
SKA3Q8IX90 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 AC232323.1-201ENST00000540724 2099 ntBASIC13.31□□□□□ -0.28
SKA3Q8IX90 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SKA3Q8IX90 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC13.31□□□□□ -0.28
SKA3Q8IX90 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms