Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 RHOXF1P1-202ENST00000635473 501 ntBASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 AL033527.4-201ENST00000641026 673 ntBASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SCUBE3Q8IX30 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 AL138725.1-201ENST00000407347 1314 ntBASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 MIR1202-201ENST00000408529 83 ntBASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 FAM8A4P-201ENST00000435433 1213 ntBASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 PACS1-203ENST00000524815 628 ntTSL 4 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 SULT1A1-211ENST00000569554 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SCUBE3Q8IX30 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 AC011840.2-201ENST00000563063 1520 ntBASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 HMGB3P14-201ENST00000494195 599 ntBASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 AC119751.2-201ENST00000504529 210 ntBASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.74■□□□□ 0.11
SCUBE3Q8IX30 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms