Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 FO681548.1-201ENST00000455617 1132 ntBASIC18.08■□□□□ 0.48
VPS53Q5VIR6 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 AC119751.2-201ENST00000504529 210 ntBASIC18.08■□□□□ 0.48
VPS53Q5VIR6 KRT90P-201ENST00000549264 1064 ntBASIC18.08■□□□□ 0.48
VPS53Q5VIR6 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 RAB43P1-201ENST00000561790 589 ntBASIC18.08■□□□□ 0.48
VPS53Q5VIR6 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS53Q5VIR6 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 AC078819.1-201ENST00000547454 765 ntBASIC18.07■□□□□ 0.48
VPS53Q5VIR6 AC012085.1-201ENST00000548270 765 ntBASIC18.07■□□□□ 0.48
VPS53Q5VIR6 MIR4259-201ENST00000584466 101 ntBASIC18.07■□□□□ 0.48
VPS53Q5VIR6 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 MIR6775-201ENST00000617557 69 ntBASIC18.07■□□□□ 0.48
VPS53Q5VIR6 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS53Q5VIR6 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 LBX2-201ENST00000341396 886 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 AC016694.1-201ENST00000434179 700 ntBASIC18.06■□□□□ 0.48
VPS53Q5VIR6 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 RPS15-202ENST00000585665 467 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 ENPP7P14-201ENST00000621765 1040 ntBASIC18.06■□□□□ 0.48
VPS53Q5VIR6 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS53Q5VIR6 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms