Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL139339.2-201ENST00000608063 657 ntBASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC88AQ3V6T2 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 PAUPAR-201ENST00000630360 2965 ntBASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 CICP6-201ENST00000457191 2729 ntBASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 MT3-203ENST00000565838 421 ntTSL 3 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 AP001184.1-201ENST00000637936 376 ntBASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 AHCYP4-201ENST00000419201 1315 ntBASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 AC013726.1-201ENST00000563747 2285 ntBASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 AC091951.1-201ENST00000512854 2465 ntBASIC17.87■□□□□ 0.45
CCDC88AQ3V6T2 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 MRPL37P1-201ENST00000592451 1337 ntBASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 ACE3P-201ENST00000423435 1973 ntBASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 AP005264.6-204ENST00000588436 719 ntBASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 MIR6816-201ENST00000620368 66 ntBASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC88AQ3V6T2 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 AC006486.2-201ENST00000624246 2199 ntBASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 AC132872.4-202ENST00000622924 2756 ntBASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 BAK1P1-201ENST00000317045 636 ntBASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 ERP29P1-201ENST00000442902 706 ntBASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 RGS5-216ENST00000449680 788 ntTSL 3 BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 FAM86B3P-203ENST00000523992 854 ntBASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 USB1-205ENST00000561743 1135 ntTSL 3 BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC88AQ3V6T2 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms