Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 AGAP7P-201ENST00000582299 2062 ntBASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 AGAP14-201ENST00000624701 2060 ntBASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 FGFR3P1-201ENST00000449999 601 ntBASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 AC092299.1-201ENST00000632679 757 ntBASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 CROCCP1-201ENST00000426910 5675 ntBASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 AC006486.2-201ENST00000624246 2199 ntBASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM1Q2M3G4 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 AC006480.2-201ENST00000609770 1337 ntBASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 PARN-202ENST00000420015 2360 ntTSL 2 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 KRT18P36-201ENST00000411618 1276 ntBASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 LINC01165-201ENST00000445190 1623 ntBASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
SHROOM1Q2M3G4 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.27■□□□□ 0.35
SHROOM1Q2M3G4 AC015909.3-201ENST00000572855 1794 ntBASIC17.27■□□□□ 0.35
SHROOM1Q2M3G4 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHROOM1Q2M3G4 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHROOM1Q2M3G4 KRT8P28-201ENST00000433288 1390 ntBASIC17.27■□□□□ 0.35
SHROOM1Q2M3G4 CAP2P1-201ENST00000557743 1390 ntBASIC17.27■□□□□ 0.35
SHROOM1Q2M3G4 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHROOM1Q2M3G4 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
SHROOM1Q2M3G4 NFIC-211ENST00000641145 8399 ntBASIC17.27■□□□□ 0.35
SHROOM1Q2M3G4 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHROOM1Q2M3G4 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SHROOM1Q2M3G4 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SHROOM1Q2M3G4 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
SHROOM1Q2M3G4 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC17.26■□□□□ 0.35
SHROOM1Q2M3G4 AC092978.1-202ENST00000637590 1327 ntBASIC17.26■□□□□ 0.35
SHROOM1Q2M3G4 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms