Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC12.87□□□□□ -0.35
ABCA4P78363 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC12.87□□□□□ -0.35
ABCA4P78363 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC12.87□□□□□ -0.35
ABCA4P78363 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
ABCA4P78363 HPN-206ENST00000597419 1212 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA4P78363 Z98259.2-201ENST00000641583 609 ntBASIC12.87□□□□□ -0.35
ABCA4P78363 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC12.87□□□□□ -0.35
ABCA4P78363 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
ABCA4P78363 AP000845.1-201ENST00000581677 2131 ntBASIC12.87□□□□□ -0.35
ABCA4P78363 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC12.87□□□□□ -0.35
ABCA4P78363 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
ABCA4P78363 TNN-203ENST00000622870 3719 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA4P78363 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.87□□□□□ -0.35
ABCA4P78363 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
ABCA4P78363 AC073352.2-201ENST00000609385 439 ntBASIC12.87□□□□□ -0.35
ABCA4P78363 RPL35-206ENST00000629845 340 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA4P78363 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
ABCA4P78363 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA4P78363 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA4P78363 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.87□□□□□ -0.35
ABCA4P78363 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.87□□□□□ -0.35
ABCA4P78363 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC12.87□□□□□ -0.35
ABCA4P78363 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA4P78363 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC12.87□□□□□ -0.35
ABCA4P78363 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
ABCA4P78363 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC12.86□□□□□ -0.35
ABCA4P78363 AC007326.2-201ENST00000624224 7579 ntBASIC12.86□□□□□ -0.35
ABCA4P78363 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.86□□□□□ -0.35
ABCA4P78363 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
ABCA4P78363 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
ABCA4P78363 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 CRCP-204ENST00000398684 492 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC12.86□□□□□ -0.35
ABCA4P78363 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 TUBB8P8-201ENST00000458717 1058 ntBASIC12.86□□□□□ -0.35
ABCA4P78363 OARD1-204ENST00000464633 717 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC12.86□□□□□ -0.35
ABCA4P78363 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC12.86□□□□□ -0.35
ABCA4P78363 CYP2T1P-202ENST00000641596 2535 ntBASIC12.86□□□□□ -0.35
ABCA4P78363 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC12.86□□□□□ -0.35
ABCA4P78363 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
ABCA4P78363 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 AC015909.3-201ENST00000572855 1794 ntBASIC12.86□□□□□ -0.35
ABCA4P78363 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 AL360270.3-201ENST00000609118 1348 ntBASIC12.86□□□□□ -0.35
ABCA4P78363 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC12.86□□□□□ -0.35
ABCA4P78363 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 AL162426.1-201ENST00000624141 743 ntBASIC12.86□□□□□ -0.35
ABCA4P78363 AC015656.1-201ENST00000624209 3578 ntBASIC12.86□□□□□ -0.35
ABCA4P78363 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA4P78363 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
ABCA4P78363 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC12.86□□□□□ -0.35
ABCA4P78363 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC12.86□□□□□ -0.35
ABCA4P78363 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms