Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC022616.1-201ENST00000518688 554 ntBASIC14.5□□□□□ -0.09
FOXA1P55317 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.5□□□□□ -0.09
FOXA1P55317 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.5□□□□□ -0.09
FOXA1P55317 AC055876.2-201ENST00000531834 546 ntBASIC14.5□□□□□ -0.09
FOXA1P55317 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.5□□□□□ -0.09
FOXA1P55317 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA1P55317 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.5□□□□□ -0.09
FOXA1P55317 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.5□□□□□ -0.09
FOXA1P55317 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
FOXA1P55317 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.5□□□□□ -0.09
FOXA1P55317 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA1P55317 AC008761.3-201ENST00000624803 892 ntBASIC14.5□□□□□ -0.09
FOXA1P55317 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.5□□□□□ -0.09
FOXA1P55317 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA1P55317 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
FOXA1P55317 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
FOXA1P55317 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
FOXA1P55317 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA1P55317 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
FOXA1P55317 AC090505.1-201ENST00000430515 1834 ntBASIC14.5□□□□□ -0.09
FOXA1P55317 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA1P55317 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
FOXA1P55317 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
FOXA1P55317 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
FOXA1P55317 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.49□□□□□ -0.09
FOXA1P55317 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
FOXA1P55317 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
FOXA1P55317 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.49□□□□□ -0.09
FOXA1P55317 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 AL442647.2-201ENST00000429864 857 ntBASIC14.49□□□□□ -0.09
FOXA1P55317 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.49□□□□□ -0.09
FOXA1P55317 AC093004.1-201ENST00000508850 424 ntBASIC14.49□□□□□ -0.09
FOXA1P55317 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.49□□□□□ -0.09
FOXA1P55317 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.49□□□□□ -0.09
FOXA1P55317 AC138761.1-201ENST00000584393 385 ntBASIC14.49□□□□□ -0.09
FOXA1P55317 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
FOXA1P55317 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.49□□□□□ -0.09
FOXA1P55317 AC099568.2-201ENST00000609194 695 ntBASIC14.49□□□□□ -0.09
FOXA1P55317 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.49□□□□□ -0.09
FOXA1P55317 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 SALL4P5-201ENST00000419001 1760 ntBASIC14.49□□□□□ -0.09
FOXA1P55317 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 AC003102.2-201ENST00000589195 1469 ntBASIC14.49□□□□□ -0.09
FOXA1P55317 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
FOXA1P55317 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.49□□□□□ -0.09
FOXA1P55317 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
FOXA1P55317 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA1P55317 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
FOXA1P55317 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA1P55317 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
FOXA1P55317 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
FOXA1P55317 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms