Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CDH3P22223 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.78□□□□□ -0.04
CDH3P22223 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CDH3P22223 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.78□□□□□ -0.04
CDH3P22223 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CDH3P22223 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CDH3P22223 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
CDH3P22223 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CDH3P22223 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.78□□□□□ -0.04
CDH3P22223 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH3P22223 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
CDH3P22223 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDH3P22223 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.77□□□□□ -0.04
CDH3P22223 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.77□□□□□ -0.04
CDH3P22223 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CDH3P22223 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CDH3P22223 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CDH3P22223 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
CDH3P22223 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.77□□□□□ -0.04
CDH3P22223 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CDH3P22223 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
CDH3P22223 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
CDH3P22223 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CDH3P22223 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CDH3P22223 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CDH3P22223 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CDH3P22223 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
CDH3P22223 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
CDH3P22223 AC092933.1-201ENST00000393644 945 ntBASIC14.77□□□□□ -0.05
CDH3P22223 AC016694.1-201ENST00000434179 700 ntBASIC14.77□□□□□ -0.05
CDH3P22223 KRT223P-202ENST00000449164 1292 ntBASIC14.77□□□□□ -0.05
CDH3P22223 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CDH3P22223 AC007551.1-201ENST00000457394 519 ntBASIC14.77□□□□□ -0.05
CDH3P22223 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.77□□□□□ -0.05
CDH3P22223 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.77□□□□□ -0.05
CDH3P22223 SNX29P1-201ENST00000548357 1007 ntBASIC14.77□□□□□ -0.05
CDH3P22223 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.77□□□□□ -0.05
CDH3P22223 SAMD11P1-201ENST00000571429 661 ntBASIC14.77□□□□□ -0.05
CDH3P22223 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.77□□□□□ -0.05
CDH3P22223 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.77□□□□□ -0.05
CDH3P22223 AL645728.2-202ENST00000641679 227 ntBASIC14.77□□□□□ -0.05
CDH3P22223 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CDH3P22223 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
CDH3P22223 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
CDH3P22223 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
CDH3P22223 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.77□□□□□ -0.05
CDH3P22223 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.77□□□□□ -0.05
CDH3P22223 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
CDH3P22223 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
CDH3P22223 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.77□□□□□ -0.05
CDH3P22223 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CDH3P22223 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.77□□□□□ -0.05
CDH3P22223 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CDH3P22223 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CDH3P22223 AC007787.1-201ENST00000588095 1583 ntBASIC14.77□□□□□ -0.05
CDH3P22223 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
CDH3P22223 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
CDH3P22223 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CDH3P22223 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CDH3P22223 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.76□□□□□ -0.05
CDH3P22223 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CDH3P22223 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.76□□□□□ -0.05
CDH3P22223 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 AC093525.8-201ENST00000624099 1342 ntBASIC14.76□□□□□ -0.05
CDH3P22223 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
CDH3P22223 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 RNU1-114P-201ENST00000365297 166 ntBASIC14.76□□□□□ -0.05
CDH3P22223 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.76□□□□□ -0.05
CDH3P22223 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.76□□□□□ -0.05
CDH3P22223 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.76□□□□□ -0.05
CDH3P22223 AC114812.1-204ENST00000449669 728 ntBASIC14.76□□□□□ -0.05
CDH3P22223 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
CDH3P22223 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.76□□□□□ -0.05
CDH3P22223 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
CDH3P22223 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CDH3P22223 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.76□□□□□ -0.05
CDH3P22223 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.76□□□□□ -0.05
CDH3P22223 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.76□□□□□ -0.05
CDH3P22223 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.76□□□□□ -0.05
CDH3P22223 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CDH3P22223 COX11-210ENST00000639671 696 ntBASIC14.76□□□□□ -0.05
CDH3P22223 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDH3P22223 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms