Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.58■□□□□ 0.24
TPM1P09493 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.58■□□□□ 0.24
TPM1P09493 LINC01115-203ENST00000606068 577 ntBASIC16.58■□□□□ 0.24
TPM1P09493 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.58■□□□□ 0.24
TPM1P09493 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.58■□□□□ 0.24
TPM1P09493 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.58■□□□□ 0.24
TPM1P09493 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
TPM1P09493 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.58■□□□□ 0.24
TPM1P09493 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
TPM1P09493 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC16.58■□□□□ 0.24
TPM1P09493 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
TPM1P09493 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.58■□□□□ 0.24
TPM1P09493 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.58■□□□□ 0.24
TPM1P09493 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 CICP8-201ENST00000455800 2813 ntBASIC16.58■□□□□ 0.24
TPM1P09493 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
TPM1P09493 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
TPM1P09493 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.57■□□□□ 0.24
TPM1P09493 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC16.57■□□□□ 0.24
TPM1P09493 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.57■□□□□ 0.24
TPM1P09493 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.57■□□□□ 0.24
TPM1P09493 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.57■□□□□ 0.24
TPM1P09493 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.57■□□□□ 0.24
TPM1P09493 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.57■□□□□ 0.24
TPM1P09493 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 AC093520.2-201ENST00000561830 333 ntBASIC16.57■□□□□ 0.24
TPM1P09493 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.57■□□□□ 0.24
TPM1P09493 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.57■□□□□ 0.24
TPM1P09493 AC009093.7-201ENST00000623853 1223 ntBASIC16.57■□□□□ 0.24
TPM1P09493 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.57■□□□□ 0.24
TPM1P09493 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.57■□□□□ 0.24
TPM1P09493 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TPM1P09493 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM1P09493 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC16.57■□□□□ 0.24
TPM1P09493 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.56■□□□□ 0.24
TPM1P09493 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC16.56■□□□□ 0.24
TPM1P09493 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC16.56■□□□□ 0.24
TPM1P09493 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC16.56■□□□□ 0.24
TPM1P09493 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
TPM1P09493 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TPM1P09493 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
TPM1P09493 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.56■□□□□ 0.24
TPM1P09493 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.56■□□□□ 0.24
TPM1P09493 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.56■□□□□ 0.24
TPM1P09493 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.56■□□□□ 0.24
TPM1P09493 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.56■□□□□ 0.24
TPM1P09493 PGAM5P1-201ENST00000518923 814 ntBASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms