Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AL137784.3-201ENST00000623858 2288 ntBASIC14.58□□□□□ -0.08
LDLRP01130 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
LDLRP01130 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.58□□□□□ -0.08
LDLRP01130 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDLRP01130 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.58□□□□□ -0.08
LDLRP01130 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.08
LDLRP01130 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDLRP01130 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.58□□□□□ -0.08
LDLRP01130 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDLRP01130 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.58□□□□□ -0.08
LDLRP01130 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDLRP01130 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
LDLRP01130 AC079781.5-202ENST00000641784 3743 ntBASIC14.57□□□□□ -0.08
LDLRP01130 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.57□□□□□ -0.08
LDLRP01130 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.57□□□□□ -0.08
LDLRP01130 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.57□□□□□ -0.08
LDLRP01130 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.57□□□□□ -0.08
LDLRP01130 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
LDLRP01130 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.57□□□□□ -0.08
LDLRP01130 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.57□□□□□ -0.08
LDLRP01130 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.57□□□□□ -0.08
LDLRP01130 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
LDLRP01130 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
LDLRP01130 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.57□□□□□ -0.08
LDLRP01130 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC14.57□□□□□ -0.08
LDLRP01130 AC007389.4-201ENST00000454674 793 ntBASIC14.57□□□□□ -0.08
LDLRP01130 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
LDLRP01130 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.57□□□□□ -0.08
LDLRP01130 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
LDLRP01130 AL512361.1-201ENST00000554200 418 ntBASIC14.57□□□□□ -0.08
LDLRP01130 AC044860.1-202ENST00000559481 777 ntBASIC14.57□□□□□ -0.08
LDLRP01130 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.57□□□□□ -0.08
LDLRP01130 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
LDLRP01130 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC14.57□□□□□ -0.08
LDLRP01130 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
LDLRP01130 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
LDLRP01130 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
LDLRP01130 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.57□□□□□ -0.08
LDLRP01130 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.57□□□□□ -0.08
LDLRP01130 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
LDLRP01130 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
LDLRP01130 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
LDLRP01130 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
LDLRP01130 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
LDLRP01130 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
LDLRP01130 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.56□□□□□ -0.08
LDLRP01130 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.56□□□□□ -0.08
LDLRP01130 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 AL136982.4-201ENST00000437689 1740 ntBASIC14.56□□□□□ -0.08
LDLRP01130 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
LDLRP01130 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.56□□□□□ -0.08
LDLRP01130 BOLA2P3-201ENST00000404566 256 ntBASIC14.56□□□□□ -0.08
LDLRP01130 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LDLRP01130 MEP1AP4-201ENST00000423244 1087 ntBASIC14.56□□□□□ -0.08
LDLRP01130 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms