Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 CICP24-201ENST00000605464 2705 ntBASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 MIR600HG-201ENST00000449175 5984 ntBASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 LINC01101-201ENST00000622953 1884 ntBASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
TRAIPQ9BWF2 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 AC091951.1-201ENST00000512854 2465 ntBASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 AL365209.1-201ENST00000624418 6473 ntBASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 CICP11-201ENST00000434745 2827 ntBASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 AC004945.1-201ENST00000416738 983 ntBASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 AL354877.1-201ENST00000424412 413 ntBASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 SCARNA20.5-201ENST00000516991 142 ntBASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAIPQ9BWF2 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 AL157414.3-201ENST00000624276 1954 ntBASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms