Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
GABPAQ06546 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
GABPAQ06546 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
GABPAQ06546 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
GABPAQ06546 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.41■□□□□ 0.38
GABPAQ06546 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.41■□□□□ 0.38
GABPAQ06546 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.41■□□□□ 0.38
GABPAQ06546 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC17.41■□□□□ 0.38
GABPAQ06546 AL596276.2-201ENST00000447525 331 ntBASIC17.41■□□□□ 0.38
GABPAQ06546 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC17.41■□□□□ 0.38
GABPAQ06546 RN7SL11P-201ENST00000471305 293 ntBASIC17.41■□□□□ 0.38
GABPAQ06546 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.41■□□□□ 0.38
GABPAQ06546 AC006122.1-201ENST00000493323 440 ntBASIC17.41■□□□□ 0.38
GABPAQ06546 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.41■□□□□ 0.38
GABPAQ06546 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC17.41■□□□□ 0.38
GABPAQ06546 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC17.41■□□□□ 0.38
GABPAQ06546 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC17.41■□□□□ 0.38
GABPAQ06546 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC17.41■□□□□ 0.38
GABPAQ06546 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC17.41■□□□□ 0.38
GABPAQ06546 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC17.41■□□□□ 0.38
GABPAQ06546 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC17.41■□□□□ 0.38
GABPAQ06546 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC17.41■□□□□ 0.38
GABPAQ06546 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
GABPAQ06546 AC091544.8-201ENST00000619490 361 ntBASIC17.41■□□□□ 0.38
GABPAQ06546 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.41■□□□□ 0.38
GABPAQ06546 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.41■□□□□ 0.38
GABPAQ06546 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 AC144522.1-201ENST00000625111 1658 ntBASIC17.41■□□□□ 0.38
GABPAQ06546 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.41■□□□□ 0.38
GABPAQ06546 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
GABPAQ06546 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 AC023157.3-201ENST00000619086 2088 ntBASIC17.41■□□□□ 0.38
GABPAQ06546 TMBIM7P-202ENST00000641474 1516 ntBASIC17.41■□□□□ 0.38
GABPAQ06546 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
GABPAQ06546 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
GABPAQ06546 LINC00554-201ENST00000564841 3011 ntBASIC17.4■□□□□ 0.38
GABPAQ06546 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.4■□□□□ 0.38
GABPAQ06546 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.4■□□□□ 0.38
GABPAQ06546 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.4■□□□□ 0.38
GABPAQ06546 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC17.4■□□□□ 0.38
GABPAQ06546 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC17.4■□□□□ 0.38
GABPAQ06546 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
GABPAQ06546 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 RN7SKP214-201ENST00000364208 315 ntBASIC17.4■□□□□ 0.38
GABPAQ06546 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC17.4■□□□□ 0.38
GABPAQ06546 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 IMP3P2-201ENST00000489760 475 ntBASIC17.4■□□□□ 0.38
GABPAQ06546 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC17.4■□□□□ 0.38
GABPAQ06546 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC17.4■□□□□ 0.38
GABPAQ06546 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 AL161670.2-201ENST00000557650 1227 ntBASIC17.4■□□□□ 0.38
GABPAQ06546 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC17.4■□□□□ 0.38
GABPAQ06546 AC103988.2-201ENST00000561804 725 ntBASIC17.4■□□□□ 0.38
GABPAQ06546 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC17.4■□□□□ 0.38
GABPAQ06546 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC17.4■□□□□ 0.38
GABPAQ06546 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC17.4■□□□□ 0.38
GABPAQ06546 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC17.4■□□□□ 0.38
GABPAQ06546 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.4■□□□□ 0.38
GABPAQ06546 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
GABPAQ06546 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.4■□□□□ 0.38
GABPAQ06546 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.4■□□□□ 0.38
GABPAQ06546 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
GABPAQ06546 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
GABPAQ06546 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
GABPAQ06546 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
GABPAQ06546 AC092135.3-201ENST00000624151 1846 ntBASIC17.4■□□□□ 0.38
GABPAQ06546 KRT8P28-201ENST00000433288 1390 ntBASIC17.4■□□□□ 0.38
GABPAQ06546 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC17.4■□□□□ 0.38
GABPAQ06546 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
GABPAQ06546 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
GABPAQ06546 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.39■□□□□ 0.38
GABPAQ06546 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
GABPAQ06546 KRT8P19-201ENST00000551916 1455 ntBASIC17.39■□□□□ 0.37
GABPAQ06546 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
GABPAQ06546 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
GABPAQ06546 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
GABPAQ06546 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms