Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC103702.1-201ENST00000548801 2630 ntBASIC17.07■□□□□ 0.32
SMARCA1P28370 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.07■□□□□ 0.32
SMARCA1P28370 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.06■□□□□ 0.32
SMARCA1P28370 KRT8P29-201ENST00000420409 1371 ntBASIC17.06■□□□□ 0.32
SMARCA1P28370 KRT8P28-201ENST00000433288 1390 ntBASIC17.06■□□□□ 0.32
SMARCA1P28370 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SMARCA1P28370 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.06■□□□□ 0.32
SMARCA1P28370 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SMARCA1P28370 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
SMARCA1P28370 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 FAM86MP-201ENST00000340703 885 ntBASIC17.06■□□□□ 0.32
SMARCA1P28370 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.06■□□□□ 0.32
SMARCA1P28370 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SMARCA1P28370 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC17.06■□□□□ 0.32
SMARCA1P28370 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.06■□□□□ 0.32
SMARCA1P28370 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.06■□□□□ 0.32
SMARCA1P28370 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.06■□□□□ 0.32
SMARCA1P28370 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC17.06■□□□□ 0.32
SMARCA1P28370 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.06■□□□□ 0.32
SMARCA1P28370 AC100827.2-201ENST00000563214 1194 ntBASIC17.06■□□□□ 0.32
SMARCA1P28370 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC17.06■□□□□ 0.32
SMARCA1P28370 MIR6074-201ENST00000612054 107 ntBASIC17.06■□□□□ 0.32
SMARCA1P28370 MIR6799-201ENST00000620297 69 ntBASIC17.06■□□□□ 0.32
SMARCA1P28370 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
SMARCA1P28370 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC17.06■□□□□ 0.32
SMARCA1P28370 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SMARCA1P28370 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SMARCA1P28370 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 AC244394.1-201ENST00000435000 1665 ntBASIC17.06■□□□□ 0.32
SMARCA1P28370 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.06■□□□□ 0.32
SMARCA1P28370 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SMARCA1P28370 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.06■□□□□ 0.32
SMARCA1P28370 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.05■□□□□ 0.32
SMARCA1P28370 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.05■□□□□ 0.32
SMARCA1P28370 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.05■□□□□ 0.32
SMARCA1P28370 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SMARCA1P28370 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SMARCA1P28370 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.05■□□□□ 0.32
SMARCA1P28370 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.05■□□□□ 0.32
SMARCA1P28370 KRTAP10-13P-201ENST00000412914 571 ntBASIC17.05■□□□□ 0.32
SMARCA1P28370 AC004898.1-201ENST00000451057 766 ntBASIC17.05■□□□□ 0.32
SMARCA1P28370 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC17.05■□□□□ 0.32
SMARCA1P28370 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC17.05■□□□□ 0.32
SMARCA1P28370 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.05■□□□□ 0.32
SMARCA1P28370 AC022748.3-201ENST00000621828 275 ntBASIC17.05■□□□□ 0.32
SMARCA1P28370 AL008638.5-201ENST00000623814 1298 ntBASIC17.05■□□□□ 0.32
SMARCA1P28370 Z98259.2-201ENST00000641583 609 ntBASIC17.05■□□□□ 0.32
SMARCA1P28370 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.05■□□□□ 0.32
SMARCA1P28370 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.05■□□□□ 0.32
SMARCA1P28370 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SMARCA1P28370 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 MYADML-201ENST00000474610 2147 ntBASIC17.05■□□□□ 0.32
SMARCA1P28370 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SMARCA1P28370 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.05■□□□□ 0.32
SMARCA1P28370 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.05■□□□□ 0.32
SMARCA1P28370 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMARCA1P28370 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMARCA1P28370 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms