Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
VIMP08670 KRT18P56-201ENST00000507275 550 ntBASIC15.14■□□□□ 0.01
VIMP08670 SKP2-204ENST00000508514 821 ntTSL 3 BASIC15.14■□□□□ 0.01
VIMP08670 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.14■□□□□ 0.01
VIMP08670 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.14■□□□□ 0.01
VIMP08670 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.14■□□□□ 0.01
VIMP08670 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.14■□□□□ 0.01
VIMP08670 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.14■□□□□ 0.01
VIMP08670 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.14■□□□□ 0.01
VIMP08670 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.14■□□□□ 0.01
VIMP08670 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.14■□□□□ 0.01
VIMP08670 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.14■□□□□ 0.01
VIMP08670 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.14■□□□□ 0.01
VIMP08670 AC004877.2-201ENST00000623941 599 ntBASIC15.14■□□□□ 0.01
VIMP08670 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
VIMP08670 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.14■□□□□ 0.01
VIMP08670 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
VIMP08670 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.14■□□□□ 0.01
VIMP08670 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC15.14■□□□□ 0.01
VIMP08670 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC15.14■□□□□ 0.01
VIMP08670 AC118758.2-201ENST00000614242 2813 ntBASIC15.14■□□□□ 0.01
VIMP08670 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.14■□□□□ 0.01
VIMP08670 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.14■□□□□ 0.01
VIMP08670 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
VIMP08670 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.13■□□□□ 0.01
VIMP08670 AC018665.1-201ENST00000622927 1362 ntBASIC15.13■□□□□ 0.01
VIMP08670 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
VIMP08670 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC15.13■□□□□ 0.01
VIMP08670 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 TSN-212ENST00000536142 3328 ntTSL 2 BASIC15.13■□□□□ 0.01
VIMP08670 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
VIMP08670 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
VIMP08670 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
VIMP08670 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.13■□□□□ 0.01
VIMP08670 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
VIMP08670 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.13■□□□□ 0.01
VIMP08670 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.13■□□□□ 0.01
VIMP08670 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.13■□□□□ 0.01
VIMP08670 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.13■□□□□ 0.01
VIMP08670 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC15.13■□□□□ 0.01
VIMP08670 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC15.13■□□□□ 0.01
VIMP08670 RARRES2P8-201ENST00000566335 367 ntBASIC15.13■□□□□ 0.01
VIMP08670 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.13■□□□□ 0.01
VIMP08670 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.13■□□□□ 0.01
VIMP08670 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
VIMP08670 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
VIMP08670 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.13■□□□□ 0.01
VIMP08670 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
VIMP08670 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VIMP08670 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC15.13■□□□□ 0.01
VIMP08670 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
VIMP08670 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.12■□□□□ 0.01
VIMP08670 AC023794.5-201ENST00000564380 2157 ntBASIC15.12■□□□□ 0.01
VIMP08670 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC15.12■□□□□ 0.01
VIMP08670 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VIMP08670 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
VIMP08670 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
VIMP08670 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms