Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FADS2-215ENST00000574708 385 ntTSL 3 BASIC18.89■□□□□ 0.61
NPHP1O15259 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 AL358472.3-201ENST00000608147 415 ntBASIC18.89■□□□□ 0.61
NPHP1O15259 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC18.89■□□□□ 0.61
NPHP1O15259 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.89■□□□□ 0.61
NPHP1O15259 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.89■□□□□ 0.61
NPHP1O15259 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.89■□□□□ 0.61
NPHP1O15259 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 AP000593.2-201ENST00000542775 1433 ntBASIC18.89■□□□□ 0.61
NPHP1O15259 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
NPHP1O15259 ZBTB45P1-201ENST00000452761 1456 ntBASIC18.89■□□□□ 0.61
NPHP1O15259 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
NPHP1O15259 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
NPHP1O15259 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NPHP1O15259 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.88■□□□□ 0.61
NPHP1O15259 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.88■□□□□ 0.61
NPHP1O15259 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
NPHP1O15259 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
NPHP1O15259 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 HNRNPA1P41-201ENST00000397777 928 ntBASIC18.88■□□□□ 0.61
NPHP1O15259 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC18.88■□□□□ 0.61
NPHP1O15259 MARK2P5-201ENST00000507649 634 ntBASIC18.88■□□□□ 0.61
NPHP1O15259 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC18.88■□□□□ 0.61
NPHP1O15259 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
NPHP1O15259 AC012044.1-201ENST00000603431 297 ntBASIC18.88■□□□□ 0.61
NPHP1O15259 AL162426.1-201ENST00000624141 743 ntBASIC18.88■□□□□ 0.61
NPHP1O15259 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC18.88■□□□□ 0.61
NPHP1O15259 AC068587.8-201ENST00000641239 219 ntBASIC18.88■□□□□ 0.61
NPHP1O15259 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
NPHP1O15259 AC010491.1-201ENST00000563101 2797 ntBASIC18.88■□□□□ 0.61
NPHP1O15259 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.88■□□□□ 0.61
NPHP1O15259 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
NPHP1O15259 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.88■□□□□ 0.61
NPHP1O15259 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.88■□□□□ 0.61
NPHP1O15259 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.88■□□□□ 0.61
NPHP1O15259 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.88■□□□□ 0.61
NPHP1O15259 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NPHP1O15259 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
NPHP1O15259 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
NPHP1O15259 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC18.87■□□□□ 0.61
NPHP1O15259 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC18.87■□□□□ 0.61
NPHP1O15259 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
NPHP1O15259 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
NPHP1O15259 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC18.87■□□□□ 0.61
NPHP1O15259 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 SHC1P1-201ENST00000425230 1745 ntBASIC18.87■□□□□ 0.61
NPHP1O15259 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC18.87■□□□□ 0.61
NPHP1O15259 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC18.87■□□□□ 0.61
NPHP1O15259 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
NPHP1O15259 MBP-227ENST00000526111 581 ntTSL 4 BASIC18.87■□□□□ 0.61
NPHP1O15259 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
NPHP1O15259 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC18.87■□□□□ 0.61
NPHP1O15259 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 DUX4L47-201ENST00000566374 394 ntBASIC18.87■□□□□ 0.61
NPHP1O15259 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.87■□□□□ 0.61
NPHP1O15259 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
NPHP1O15259 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.86■□□□□ 0.61
NPHP1O15259 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPHP1O15259 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NPHP1O15259 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPHP1O15259 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NPHP1O15259 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPHP1O15259 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPHP1O15259 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPHP1O15259 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
NPHP1O15259 MVK-214ENST00000629016 1591 ntTSL 5 BASIC18.86■□□□□ 0.61
NPHP1O15259 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms