Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ENPP7P14-201ENST00000621765 1040 ntBASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 AC006453.4-201ENST00000636949 1252 ntBASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 AC007686.3-201ENST00000619017 3487 ntBASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 REXO1L6P-201ENST00000603433 1515 ntBASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
COL4A3BPQ9Y5P4 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 AHCYP2-201ENST00000430630 1300 ntBASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 AC055811.4-201ENST00000624039 1754 ntBASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
COL4A3BPQ9Y5P4 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 TUBB1P2-201ENST00000422712 1306 ntBASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 TUBB1P1-201ENST00000503144 1300 ntBASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 MIR1202-201ENST00000408529 83 ntBASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 DUX4L45-201ENST00000566406 1057 ntBASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 AC010328.2-201ENST00000597698 1111 ntBASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 MYO15B-237ENST00000642007 4893 ntBASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
COL4A3BPQ9Y5P4 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
COL4A3BPQ9Y5P4 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms