Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CISHQ9NSE2 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.97■□□□□ 0.15
CISHQ9NSE2 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CISHQ9NSE2 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 AC009093.2-202ENST00000620513 2079 ntBASIC15.96■□□□□ 0.15
CISHQ9NSE2 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 MIR1202-201ENST00000408529 83 ntBASIC15.96■□□□□ 0.15
CISHQ9NSE2 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 AC104989.1-201ENST00000519711 778 ntBASIC15.96■□□□□ 0.15
CISHQ9NSE2 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CISHQ9NSE2 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.96■□□□□ 0.15
CISHQ9NSE2 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CISHQ9NSE2 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
CISHQ9NSE2 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.96■□□□□ 0.14
CISHQ9NSE2 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 AHCYP2-201ENST00000430630 1300 ntBASIC15.95■□□□□ 0.14
CISHQ9NSE2 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 RN7SKP175-201ENST00000408472 289 ntBASIC15.95■□□□□ 0.14
CISHQ9NSE2 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 AC026954.1-201ENST00000429771 1293 ntBASIC15.95■□□□□ 0.14
CISHQ9NSE2 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 AC007292.2-201ENST00000593524 1812 ntBASIC15.95■□□□□ 0.14
CISHQ9NSE2 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.95■□□□□ 0.14
CISHQ9NSE2 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CISHQ9NSE2 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms