Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP28Q96RU2 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
USP28Q96RU2 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP28Q96RU2 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP28Q96RU2 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP28Q96RU2 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.34
USP28Q96RU2 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
USP28Q96RU2 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
USP28Q96RU2 AC007541.1-201ENST00000570282 1469 ntBASIC17.14■□□□□ 0.33
USP28Q96RU2 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
USP28Q96RU2 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.14■□□□□ 0.33
USP28Q96RU2 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC17.14■□□□□ 0.33
USP28Q96RU2 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.14■□□□□ 0.33
USP28Q96RU2 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.14■□□□□ 0.33
USP28Q96RU2 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 ELK1P1-201ENST00000485699 580 ntBASIC17.14■□□□□ 0.33
USP28Q96RU2 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.14■□□□□ 0.33
USP28Q96RU2 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.14■□□□□ 0.33
USP28Q96RU2 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.14■□□□□ 0.33
USP28Q96RU2 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.14■□□□□ 0.33
USP28Q96RU2 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
USP28Q96RU2 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.14■□□□□ 0.33
USP28Q96RU2 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 SALL4P5-201ENST00000419001 1760 ntBASIC17.14■□□□□ 0.33
USP28Q96RU2 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
USP28Q96RU2 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.14■□□□□ 0.33
USP28Q96RU2 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC17.14■□□□□ 0.33
USP28Q96RU2 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 AC104581.4-201ENST00000623126 3052 ntBASIC17.14■□□□□ 0.33
USP28Q96RU2 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP28Q96RU2 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC17.14■□□□□ 0.33
USP28Q96RU2 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC17.13■□□□□ 0.33
USP28Q96RU2 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
USP28Q96RU2 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
USP28Q96RU2 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC17.13■□□□□ 0.33
USP28Q96RU2 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
USP28Q96RU2 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.13■□□□□ 0.33
USP28Q96RU2 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.13■□□□□ 0.33
USP28Q96RU2 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
USP28Q96RU2 MYCLP2-201ENST00000449268 967 ntBASIC17.13■□□□□ 0.33
USP28Q96RU2 API5-211ENST00000534695 560 ntTSL 5 BASIC17.13■□□□□ 0.33
USP28Q96RU2 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.13■□□□□ 0.33
USP28Q96RU2 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
USP28Q96RU2 AP005019.2-201ENST00000615104 511 ntBASIC17.13■□□□□ 0.33
USP28Q96RU2 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.13■□□□□ 0.33
USP28Q96RU2 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
USP28Q96RU2 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
USP28Q96RU2 OS9-207ENST00000439210 1946 ntTSL 2 BASIC17.13■□□□□ 0.33
USP28Q96RU2 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP28Q96RU2 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP28Q96RU2 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.12■□□□□ 0.33
USP28Q96RU2 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
USP28Q96RU2 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP28Q96RU2 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP28Q96RU2 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP28Q96RU2 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
USP28Q96RU2 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP28Q96RU2 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
USP28Q96RU2 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.12■□□□□ 0.33
USP28Q96RU2 ACTBP8-201ENST00000403258 1108 ntBASIC17.12■□□□□ 0.33
USP28Q96RU2 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.12■□□□□ 0.33
USP28Q96RU2 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP28Q96RU2 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
USP28Q96RU2 CTBP2P3-201ENST00000585629 1255 ntBASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms