Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 EIF3FP3-201ENST00000434851 1086 ntBASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
SYNE3Q6ZMZ3 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SYNE3Q6ZMZ3 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.42
SYNE3Q6ZMZ3 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.71■□□□□ 0.42
SYNE3Q6ZMZ3 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
SYNE3Q6ZMZ3 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
SYNE3Q6ZMZ3 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
SYNE3Q6ZMZ3 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 AC005229.1-201ENST00000392885 409 ntBASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 AP001889.1-201ENST00000525414 633 ntBASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 AL022328.1-201ENST00000610050 478 ntBASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 AC012645.4-201ENST00000610691 1061 ntBASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 CTBP1-AS2-206ENST00000581398 5652 ntBASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 AL390755.1-201ENST00000623716 2027 ntBASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SYNE3Q6ZMZ3 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 AC026434.2-201ENST00000506094 1078 ntBASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.69■□□□□ 0.42
SYNE3Q6ZMZ3 BTNL10-201ENST00000595971 695 ntBASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms