Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 BOLA2P3-201ENST00000404566 256 ntBASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 NEU3-203ENST00000529024 581 ntTSL 3 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 NAA38-207ENST00000576861 556 ntTSL 3 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 LINC00552-201ENST00000625151 2579 ntBASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PDLIM3Q53GG5 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 AC084364.1-201ENST00000551967 1556 ntBASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 AL607033.1-201ENST00000623900 1599 ntBASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 AL359258.3-201ENST00000622910 2331 ntBASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 GHSR-202ENST00000427970 912 ntBASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 MFF-223ENST00000524634 647 ntTSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 AC009407.1-201ENST00000568958 598 ntBASIC12.56□□□□□ -0.4
PDLIM3Q53GG5 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms