Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNF41-210ENST00000552244 716 ntTSL 3 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 KLK11-210ENST00000600362 759 ntTSL 3 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 AC025181.2-201ENST00000606994 802 ntBASIC14.49□□□□□ -0.09
COL28A1Q2UY09 AC107373.2-201ENST00000607735 490 ntBASIC14.49□□□□□ -0.09
COL28A1Q2UY09 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.49□□□□□ -0.09
COL28A1Q2UY09 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 SMS-201ENST00000379404 1174 ntTSL 3 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 AC097065.1-201ENST00000425737 517 ntBASIC14.48□□□□□ -0.09
COL28A1Q2UY09 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 OARD1-204ENST00000464633 717 ntTSL 2 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 IGLV3-15-201ENST00000518356 244 ntBASIC14.48□□□□□ -0.09
COL28A1Q2UY09 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 AL161670.2-201ENST00000557650 1227 ntBASIC14.48□□□□□ -0.09
COL28A1Q2UY09 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 MIR4313-201ENST00000580760 101 ntBASIC14.48□□□□□ -0.09
COL28A1Q2UY09 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 AC132192.2-201ENST00000596206 1147 ntBASIC14.48□□□□□ -0.09
COL28A1Q2UY09 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 WT1-AS_6.1-201ENST00000614919 121 ntBASIC14.48□□□□□ -0.09
COL28A1Q2UY09 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 AC100757.4-201ENST00000626934 759 ntBASIC14.48□□□□□ -0.09
COL28A1Q2UY09 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 DRD5P1-201ENST00000456605 1438 ntBASIC14.48□□□□□ -0.09
COL28A1Q2UY09 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL28A1Q2UY09 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 CICP4-201ENST00000447359 2812 ntBASIC14.47□□□□□ -0.09
COL28A1Q2UY09 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 AC025271.4-201ENST00000621477 1726 ntBASIC14.47□□□□□ -0.09
COL28A1Q2UY09 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms