Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC12.91□□□□□ -0.34
ABCA4P78363 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
ABCA4P78363 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.91□□□□□ -0.34
ABCA4P78363 MYB-242ENST00000618728 3545 ntTSL 5 BASIC12.91□□□□□ -0.34
ABCA4P78363 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.91□□□□□ -0.34
ABCA4P78363 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC12.91□□□□□ -0.34
ABCA4P78363 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA4P78363 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA4P78363 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA4P78363 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.91□□□□□ -0.34
ABCA4P78363 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA4P78363 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
ABCA4P78363 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC12.91□□□□□ -0.34
ABCA4P78363 AL008718.2-201ENST00000609206 1313 ntBASIC12.91□□□□□ -0.34
ABCA4P78363 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
ABCA4P78363 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
ABCA4P78363 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.9□□□□□ -0.34
ABCA4P78363 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.9□□□□□ -0.34
ABCA4P78363 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC12.9□□□□□ -0.34
ABCA4P78363 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
ABCA4P78363 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC12.9□□□□□ -0.34
ABCA4P78363 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC12.9□□□□□ -0.34
ABCA4P78363 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 RPSAP31-201ENST00000416648 895 ntBASIC12.9□□□□□ -0.34
ABCA4P78363 RPL18P13-201ENST00000478088 569 ntBASIC12.9□□□□□ -0.34
ABCA4P78363 RN7SL818P-201ENST00000485099 259 ntBASIC12.9□□□□□ -0.34
ABCA4P78363 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC12.9□□□□□ -0.34
ABCA4P78363 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC12.9□□□□□ -0.34
ABCA4P78363 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC12.9□□□□□ -0.34
ABCA4P78363 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC12.9□□□□□ -0.34
ABCA4P78363 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 RN7SL725P-201ENST00000606439 259 ntBASIC12.9□□□□□ -0.34
ABCA4P78363 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
ABCA4P78363 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC12.9□□□□□ -0.34
ABCA4P78363 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.34
ABCA4P78363 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
ABCA4P78363 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
ABCA4P78363 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.9□□□□□ -0.34
ABCA4P78363 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
ABCA4P78363 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
ABCA4P78363 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.35
ABCA4P78363 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
ABCA4P78363 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC12.9□□□□□ -0.35
ABCA4P78363 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
ABCA4P78363 AC098935.1-201ENST00000446057 611 ntBASIC12.9□□□□□ -0.35
ABCA4P78363 RN7SL11P-201ENST00000471305 293 ntBASIC12.9□□□□□ -0.35
ABCA4P78363 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC12.9□□□□□ -0.35
ABCA4P78363 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC12.9□□□□□ -0.35
ABCA4P78363 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC12.9□□□□□ -0.35
ABCA4P78363 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC12.9□□□□□ -0.35
ABCA4P78363 DUX4L46-201ENST00000566845 751 ntBASIC12.9□□□□□ -0.35
ABCA4P78363 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.35
ABCA4P78363 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC12.9□□□□□ -0.35
ABCA4P78363 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.35
ABCA4P78363 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC12.9□□□□□ -0.35
ABCA4P78363 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.89□□□□□ -0.35
ABCA4P78363 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.89□□□□□ -0.35
ABCA4P78363 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC12.89□□□□□ -0.35
ABCA4P78363 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
ABCA4P78363 AC244394.1-201ENST00000435000 1665 ntBASIC12.89□□□□□ -0.35
ABCA4P78363 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC12.89□□□□□ -0.35
ABCA4P78363 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
ABCA4P78363 SHC1P1-201ENST00000425230 1745 ntBASIC12.89□□□□□ -0.35
ABCA4P78363 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
ABCA4P78363 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC12.89□□□□□ -0.35
ABCA4P78363 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC12.89□□□□□ -0.35
ABCA4P78363 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
ABCA4P78363 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
ABCA4P78363 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
ABCA4P78363 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC12.89□□□□□ -0.35
ABCA4P78363 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC12.89□□□□□ -0.35
ABCA4P78363 NEU3-205ENST00000531619 582 ntTSL 5 BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms