Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 CICP23-201ENST00000605013 2741 ntBASIC12.2□□□□□ -0.46
LMO4P61968 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC12.2□□□□□ -0.46
LMO4P61968 PARN-202ENST00000420015 2360 ntTSL 2 BASIC12.2□□□□□ -0.46
LMO4P61968 SF1-209ENST00000433274 2317 ntTSL 2 BASIC12.2□□□□□ -0.46
LMO4P61968 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC12.2□□□□□ -0.46
LMO4P61968 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC12.2□□□□□ -0.46
LMO4P61968 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LMO4P61968 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC12.19□□□□□ -0.46
LMO4P61968 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 AC091951.1-201ENST00000512854 2465 ntBASIC12.19□□□□□ -0.46
LMO4P61968 AL136172.1-201ENST00000598590 1394 ntBASIC12.19□□□□□ -0.46
LMO4P61968 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
LMO4P61968 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
LMO4P61968 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 CYP4F23P-201ENST00000593402 1579 ntBASIC12.19□□□□□ -0.46
LMO4P61968 MVK-214ENST00000629016 1591 ntTSL 5 BASIC12.19□□□□□ -0.46
LMO4P61968 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
LMO4P61968 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC12.19□□□□□ -0.46
LMO4P61968 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 HNRNPA1P27-201ENST00000412087 955 ntBASIC12.19□□□□□ -0.46
LMO4P61968 AC007274.2-201ENST00000421675 662 ntBASIC12.19□□□□□ -0.46
LMO4P61968 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 AL353637.1-201ENST00000451571 732 ntBASIC12.19□□□□□ -0.46
LMO4P61968 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC12.19□□□□□ -0.46
LMO4P61968 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 AC090857.1-201ENST00000527400 390 ntBASIC12.19□□□□□ -0.46
LMO4P61968 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC12.19□□□□□ -0.46
LMO4P61968 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 AC103988.2-201ENST00000561804 725 ntBASIC12.19□□□□□ -0.46
LMO4P61968 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC12.19□□□□□ -0.46
LMO4P61968 MIR3907-201ENST00000579424 151 ntBASIC12.19□□□□□ -0.46
LMO4P61968 CENPX-208ENST00000584347 799 ntTSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 AC020922.3-201ENST00000595064 547 ntBASIC12.19□□□□□ -0.46
LMO4P61968 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 AL353770.1-201ENST00000614915 403 ntBASIC12.19□□□□□ -0.46
LMO4P61968 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.19□□□□□ -0.46
LMO4P61968 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC12.19□□□□□ -0.46
LMO4P61968 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
LMO4P61968 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LMO4P61968 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC12.18□□□□□ -0.46
LMO4P61968 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
LMO4P61968 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC12.18□□□□□ -0.46
LMO4P61968 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 AC092135.3-201ENST00000624151 1846 ntBASIC12.18□□□□□ -0.46
LMO4P61968 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
LMO4P61968 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC12.18□□□□□ -0.46
LMO4P61968 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC12.18□□□□□ -0.46
LMO4P61968 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
LMO4P61968 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
LMO4P61968 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 AC073347.1-201ENST00000421633 2643 ntBASIC12.18□□□□□ -0.46
LMO4P61968 TMBIM7P-202ENST00000641474 1516 ntBASIC12.18□□□□□ -0.46
LMO4P61968 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
LMO4P61968 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
LMO4P61968 LINC00554-201ENST00000564841 3011 ntBASIC12.18□□□□□ -0.46
LMO4P61968 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
LMO4P61968 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC12.18□□□□□ -0.46
LMO4P61968 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LMO4P61968 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC12.18□□□□□ -0.46
LMO4P61968 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC12.18□□□□□ -0.46
LMO4P61968 PDIA3P2-201ENST00000428073 158 ntBASIC12.18□□□□□ -0.46
LMO4P61968 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC12.18□□□□□ -0.46
LMO4P61968 PTPA-217ENST00000434095 870 ntTSL 2 BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms