Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CTCFP49711 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CTCFP49711 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.26■□□□□ 0.35
CTCFP49711 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CTCFP49711 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC17.25■□□□□ 0.35
CTCFP49711 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CTCFP49711 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CTCFP49711 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CTCFP49711 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.25■□□□□ 0.35
CTCFP49711 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CTCFP49711 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CTCFP49711 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.25■□□□□ 0.35
CTCFP49711 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC17.25■□□□□ 0.35
CTCFP49711 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 AF274858.1-201ENST00000406288 372 ntBASIC17.25■□□□□ 0.35
CTCFP49711 BANF1P3-201ENST00000412556 261 ntBASIC17.25■□□□□ 0.35
CTCFP49711 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC17.25■□□□□ 0.35
CTCFP49711 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 RPSAP15-201ENST00000448168 861 ntBASIC17.25■□□□□ 0.35
CTCFP49711 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CTCFP49711 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC17.25■□□□□ 0.35
CTCFP49711 AC063952.3-201ENST00000467756 308 ntBASIC17.25■□□□□ 0.35
CTCFP49711 AC026470.1-201ENST00000478038 846 ntBASIC17.25■□□□□ 0.35
CTCFP49711 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC17.25■□□□□ 0.35
CTCFP49711 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 MT3-203ENST00000565838 421 ntTSL 3 BASIC17.25■□□□□ 0.35
CTCFP49711 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC17.25■□□□□ 0.35
CTCFP49711 MED11-202ENST00000573708 802 ntTSL 2 BASIC17.25■□□□□ 0.35
CTCFP49711 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC17.25■□□□□ 0.35
CTCFP49711 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC17.25■□□□□ 0.35
CTCFP49711 AC010632.2-201ENST00000588369 1224 ntBASIC17.25■□□□□ 0.35
CTCFP49711 NAMA-206ENST00000605377 509 ntTSL 5 BASIC17.25■□□□□ 0.35
CTCFP49711 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
CTCFP49711 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.25■□□□□ 0.35
CTCFP49711 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CTCFP49711 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CTCFP49711 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CTCFP49711 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.24■□□□□ 0.35
CTCFP49711 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTCFP49711 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC17.24■□□□□ 0.35
CTCFP49711 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CTCFP49711 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CTCFP49711 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC17.24■□□□□ 0.35
CTCFP49711 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CTCFP49711 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CTCFP49711 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTCFP49711 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.24■□□□□ 0.35
CTCFP49711 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTCFP49711 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CTCFP49711 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTCFP49711 TSPY25P-201ENST00000429463 745 ntBASIC17.24■□□□□ 0.35
CTCFP49711 RNLS-203ENST00000437752 525 ntTSL 2 BASIC17.24■□□□□ 0.35
CTCFP49711 RPL35P9-201ENST00000446059 350 ntBASIC17.24■□□□□ 0.35
CTCFP49711 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC17.24■□□□□ 0.35
CTCFP49711 IGKV1OR-2-201ENST00000457995 350 ntBASIC17.24■□□□□ 0.35
CTCFP49711 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC17.24■□□□□ 0.35
CTCFP49711 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC17.24■□□□□ 0.35
CTCFP49711 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.24■□□□□ 0.35
CTCFP49711 DUT-207ENST00000559416 635 ntTSL 2 BASIC17.24■□□□□ 0.35
CTCFP49711 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC17.24■□□□□ 0.35
CTCFP49711 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC17.24■□□□□ 0.35
CTCFP49711 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC17.24■□□□□ 0.35
CTCFP49711 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CTCFP49711 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.24■□□□□ 0.35
CTCFP49711 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CTCFP49711 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTCFP49711 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.24■□□□□ 0.35
CTCFP49711 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTCFP49711 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CTCFP49711 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.24■□□□□ 0.35
CTCFP49711 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CTCFP49711 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.24■□□□□ 0.35
CTCFP49711 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTCFP49711 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CTCFP49711 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CTCFP49711 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms