Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
NKX2-1P43699 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
NKX2-1P43699 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
NKX2-1P43699 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
NKX2-1P43699 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
NKX2-1P43699 SPCS2P4-201ENST00000436160 681 ntBASIC12.36□□□□□ -0.43
NKX2-1P43699 SPDYE11-202ENST00000450699 704 ntBASIC12.36□□□□□ -0.43
NKX2-1P43699 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
NKX2-1P43699 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC12.36□□□□□ -0.43
NKX2-1P43699 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC12.36□□□□□ -0.43
NKX2-1P43699 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC12.36□□□□□ -0.43
NKX2-1P43699 RNA5SP416-201ENST00000516838 111 ntBASIC12.36□□□□□ -0.43
NKX2-1P43699 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC12.36□□□□□ -0.43
NKX2-1P43699 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC12.36□□□□□ -0.43
NKX2-1P43699 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC12.36□□□□□ -0.43
NKX2-1P43699 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC12.36□□□□□ -0.43
NKX2-1P43699 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 RARRES2P9-201ENST00000565168 469 ntBASIC12.36□□□□□ -0.43
NKX2-1P43699 SPDYE9P-201ENST00000570642 692 ntBASIC12.36□□□□□ -0.43
NKX2-1P43699 SSH2-211ENST00000590153 570 ntTSL 4 BASIC12.36□□□□□ -0.43
NKX2-1P43699 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
NKX2-1P43699 AC120114.3-201ENST00000611923 658 ntBASIC12.36□□□□□ -0.43
NKX2-1P43699 SPDYE10P-202ENST00000612005 668 ntBASIC12.36□□□□□ -0.43
NKX2-1P43699 SPDYE8P-202ENST00000612377 668 ntBASIC12.36□□□□□ -0.43
NKX2-1P43699 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC12.36□□□□□ -0.43
NKX2-1P43699 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC12.36□□□□□ -0.43
NKX2-1P43699 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC12.36□□□□□ -0.43
NKX2-1P43699 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
NKX2-1P43699 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC12.36□□□□□ -0.43
NKX2-1P43699 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC12.36□□□□□ -0.43
NKX2-1P43699 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
NKX2-1P43699 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
NKX2-1P43699 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
NKX2-1P43699 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
NKX2-1P43699 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
NKX2-1P43699 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
NKX2-1P43699 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC12.35□□□□□ -0.43
NKX2-1P43699 KRT8P24-201ENST00000560290 1559 ntBASIC12.35□□□□□ -0.43
NKX2-1P43699 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 GALC-206ENST00000544807 2528 ntTSL 2 BASIC12.35□□□□□ -0.43
NKX2-1P43699 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 AGGF1P1-201ENST00000509500 2073 ntBASIC12.35□□□□□ -0.43
NKX2-1P43699 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
NKX2-1P43699 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
NKX2-1P43699 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
NKX2-1P43699 RBM39-205ENST00000397370 612 ntTSL 2 BASIC12.35□□□□□ -0.43
NKX2-1P43699 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC12.35□□□□□ -0.43
NKX2-1P43699 HNRNPA1P28-201ENST00000424481 961 ntBASIC12.35□□□□□ -0.43
NKX2-1P43699 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms