Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 MIR661-201ENST00000384842 89 ntBASIC11.51□□□□□ -0.57
HLA-DMBP28068 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 SERBP1P5-201ENST00000510079 1181 ntBASIC11.51□□□□□ -0.57
HLA-DMBP28068 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 STOM-203ENST00000538954 1257 ntTSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 SSH2-210ENST00000582084 560 ntTSL 3 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 AC004233.3-201ENST00000607794 1269 ntBASIC11.51□□□□□ -0.57
HLA-DMBP28068 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 5S_rRNA.22-201ENST00000614916 106 ntBASIC11.51□□□□□ -0.57
HLA-DMBP28068 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 AL360270.3-201ENST00000609118 1348 ntBASIC11.51□□□□□ -0.57
HLA-DMBP28068 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 TDG-209ENST00000544861 1387 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DMBP28068 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DMBP28068 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 AC041040.2-201ENST00000622926 2899 ntBASIC11.5□□□□□ -0.57
HLA-DMBP28068 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 MRPS18AP1-201ENST00000414458 589 ntBASIC11.5□□□□□ -0.57
HLA-DMBP28068 GOLGA6L11P-201ENST00000417252 1298 ntBASIC11.5□□□□□ -0.57
HLA-DMBP28068 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 AC114501.2-201ENST00000439631 535 ntBASIC11.5□□□□□ -0.57
HLA-DMBP28068 TAF8-206ENST00000472818 719 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 AC004066.1-201ENST00000502488 802 ntBASIC11.5□□□□□ -0.57
HLA-DMBP28068 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 AC009407.1-201ENST00000568958 598 ntBASIC11.5□□□□□ -0.57
HLA-DMBP28068 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DMBP28068 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DMBP28068 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms