Protein–RNA interactions for Protein: P26045

PTPN3, Tyrosine-protein phosphatase non-receptor type 3, humanhuman

Predictions only

Length 913 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3P26045 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN3P26045 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN3P26045 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN3P26045 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN3P26045 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
PTPN3P26045 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
PTPN3P26045 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN3P26045 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN3P26045 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PTPN3P26045 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN3P26045 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 POM121L8P-201ENST00000417732 1281 ntBASIC15.29■□□□□ 0.04
PTPN3P26045 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN3P26045 POM121L9P-203ENST00000441984 1285 ntBASIC15.29■□□□□ 0.04
PTPN3P26045 RN7SL692P-201ENST00000464677 288 ntBASIC15.29■□□□□ 0.04
PTPN3P26045 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.29■□□□□ 0.04
PTPN3P26045 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PTPN3P26045 AP001889.1-201ENST00000525414 633 ntBASIC15.29■□□□□ 0.04
PTPN3P26045 AP005018.1-201ENST00000525475 301 ntBASIC15.29■□□□□ 0.04
PTPN3P26045 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PTPN3P26045 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
PTPN3P26045 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
PTPN3P26045 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.29■□□□□ 0.04
PTPN3P26045 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PTPN3P26045 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
PTPN3P26045 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN3P26045 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN3P26045 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
PTPN3P26045 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PTPN3P26045 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN3P26045 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
PTPN3P26045 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PTPN3P26045 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 MYO15B-237ENST00000642007 4893 ntBASIC15.28■□□□□ 0.04
PTPN3P26045 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
PTPN3P26045 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PTPN3P26045 AL138725.1-201ENST00000407347 1314 ntBASIC15.28■□□□□ 0.04
PTPN3P26045 CLUHP2-201ENST00000426660 1303 ntBASIC15.28■□□□□ 0.04
PTPN3P26045 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
PTPN3P26045 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.28■□□□□ 0.04
PTPN3P26045 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.28■□□□□ 0.04
PTPN3P26045 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.28■□□□□ 0.04
PTPN3P26045 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.28■□□□□ 0.04
PTPN3P26045 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
PTPN3P26045 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.28■□□□□ 0.04
PTPN3P26045 AC245100.3-201ENST00000441281 285 ntBASIC15.28■□□□□ 0.04
PTPN3P26045 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 AC007389.4-201ENST00000454674 793 ntBASIC15.28■□□□□ 0.04
PTPN3P26045 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 AC011495.1-201ENST00000498085 584 ntBASIC15.28■□□□□ 0.04
PTPN3P26045 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 AL596325.1-201ENST00000563991 1082 ntBASIC15.28■□□□□ 0.04
PTPN3P26045 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.28■□□□□ 0.04
PTPN3P26045 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PTPN3P26045 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
PTPN3P26045 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN3P26045 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN3P26045 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms