Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.26■□□□□ 0.51
COL5A3P25940 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
COL5A3P25940 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 NME4-203ENST00000397722 1232 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC18.26■□□□□ 0.51
COL5A3P25940 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC18.26■□□□□ 0.51
COL5A3P25940 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
COL5A3P25940 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC18.26■□□□□ 0.51
COL5A3P25940 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC18.25■□□□□ 0.51
COL5A3P25940 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC18.25■□□□□ 0.51
COL5A3P25940 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC18.25■□□□□ 0.51
COL5A3P25940 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
COL5A3P25940 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC18.25■□□□□ 0.51
COL5A3P25940 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 FAU-202ENST00000434372 533 ntTSL 2 BASIC18.25■□□□□ 0.51
COL5A3P25940 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC18.25■□□□□ 0.51
COL5A3P25940 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC18.25■□□□□ 0.51
COL5A3P25940 AC012158.2-201ENST00000536546 354 ntBASIC18.25■□□□□ 0.51
COL5A3P25940 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC18.25■□□□□ 0.51
COL5A3P25940 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.25■□□□□ 0.51
COL5A3P25940 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
COL5A3P25940 MX1-218ENST00000619682 1980 ntTSL 5 BASIC18.25■□□□□ 0.51
COL5A3P25940 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC18.25■□□□□ 0.51
COL5A3P25940 CCT8L1P-201ENST00000465400 1674 ntBASIC18.25■□□□□ 0.51
COL5A3P25940 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
COL5A3P25940 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL5A3P25940 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.24■□□□□ 0.51
COL5A3P25940 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC18.24■□□□□ 0.51
COL5A3P25940 EEF1DP2-201ENST00000433698 843 ntBASIC18.24■□□□□ 0.51
COL5A3P25940 RN7SL788P-201ENST00000460504 316 ntBASIC18.24■□□□□ 0.51
COL5A3P25940 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
COL5A3P25940 AC005740.1-201ENST00000515639 522 ntBASIC18.24■□□□□ 0.51
COL5A3P25940 SORD2P-201ENST00000558556 1069 ntBASIC18.24■□□□□ 0.51
COL5A3P25940 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC18.24■□□□□ 0.51
COL5A3P25940 AC006483.2-201ENST00000609813 515 ntBASIC18.24■□□□□ 0.51
COL5A3P25940 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC18.24■□□□□ 0.51
COL5A3P25940 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.24■□□□□ 0.51
COL5A3P25940 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
COL5A3P25940 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL5A3P25940 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A3P25940 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A3P25940 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC18.23■□□□□ 0.51
COL5A3P25940 DDX39AP1-201ENST00000445147 1181 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 AC025186.1-201ENST00000478174 870 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC18.23■□□□□ 0.51
COL5A3P25940 MAX-218ENST00000557746 571 ntTSL 4 BASIC18.23■□□□□ 0.51
COL5A3P25940 AC008972.2-201ENST00000606587 494 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 AP003392.6-201ENST00000607709 325 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 RNF146-211ENST00000609447 607 ntTSL 4 BASIC18.23■□□□□ 0.51
COL5A3P25940 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
COL5A3P25940 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL5A3P25940 AL109954.1-202ENST00000564051 2148 ntBASIC18.23■□□□□ 0.51
COL5A3P25940 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC18.23■□□□□ 0.51
COL5A3P25940 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
COL5A3P25940 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms