Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
BDNFP23560 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC15.79■□□□□ 0.12
BDNFP23560 AC243960.2-201ENST00000600996 747 ntBASIC15.79■□□□□ 0.12
BDNFP23560 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
BDNFP23560 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.79■□□□□ 0.12
BDNFP23560 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BDNFP23560 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.79■□□□□ 0.12
BDNFP23560 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.79■□□□□ 0.12
BDNFP23560 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
BDNFP23560 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 CICP23-201ENST00000605013 2741 ntBASIC15.78■□□□□ 0.12
BDNFP23560 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC15.78■□□□□ 0.12
BDNFP23560 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 MIR663B-201ENST00000408361 115 ntBASIC15.78■□□□□ 0.12
BDNFP23560 TLE1P1-201ENST00000422965 589 ntBASIC15.78■□□□□ 0.12
BDNFP23560 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.78■□□□□ 0.12
BDNFP23560 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.78■□□□□ 0.12
BDNFP23560 FAM8A2P-201ENST00000528813 1142 ntBASIC15.78■□□□□ 0.12
BDNFP23560 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.78■□□□□ 0.12
BDNFP23560 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.78■□□□□ 0.12
BDNFP23560 EMC4-209ENST00000559421 497 ntTSL 2 BASIC15.78■□□□□ 0.12
BDNFP23560 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.78■□□□□ 0.12
BDNFP23560 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.78■□□□□ 0.12
BDNFP23560 AL136301.1-201ENST00000615830 422 ntBASIC15.78■□□□□ 0.12
BDNFP23560 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.78■□□□□ 0.12
BDNFP23560 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
BDNFP23560 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.78■□□□□ 0.12
BDNFP23560 AC063926.3-201ENST00000624734 5658 ntBASIC15.78■□□□□ 0.12
BDNFP23560 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.78■□□□□ 0.12
BDNFP23560 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
BDNFP23560 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.77■□□□□ 0.12
BDNFP23560 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
BDNFP23560 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.77■□□□□ 0.12
BDNFP23560 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
BDNFP23560 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.77■□□□□ 0.12
BDNFP23560 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.77■□□□□ 0.12
BDNFP23560 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.77■□□□□ 0.12
BDNFP23560 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC15.77■□□□□ 0.12
BDNFP23560 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.77■□□□□ 0.12
BDNFP23560 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.12
BDNFP23560 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC15.77■□□□□ 0.12
BDNFP23560 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.77■□□□□ 0.12
BDNFP23560 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC15.77■□□□□ 0.12
BDNFP23560 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC15.77■□□□□ 0.12
BDNFP23560 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.77■□□□□ 0.12
BDNFP23560 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
BDNFP23560 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.77■□□□□ 0.12
BDNFP23560 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms