Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.87□□□□□ -0.03
COL6A2P12110 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
COL6A2P12110 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A2P12110 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A2P12110 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
COL6A2P12110 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A2P12110 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
COL6A2P12110 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A2P12110 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 KRT8P22-201ENST00000562317 1415 ntBASIC14.86□□□□□ -0.03
COL6A2P12110 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A2P12110 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
COL6A2P12110 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A2P12110 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 TLE1P1-201ENST00000422965 589 ntBASIC14.86□□□□□ -0.03
COL6A2P12110 AC114812.1-204ENST00000449669 728 ntBASIC14.86□□□□□ -0.03
COL6A2P12110 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.86□□□□□ -0.03
COL6A2P12110 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.86□□□□□ -0.03
COL6A2P12110 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.86□□□□□ -0.03
COL6A2P12110 AC092364.2-202ENST00000597012 1073 ntBASIC14.86□□□□□ -0.03
COL6A2P12110 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.86□□□□□ -0.03
COL6A2P12110 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.86□□□□□ -0.03
COL6A2P12110 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.86□□□□□ -0.03
COL6A2P12110 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
COL6A2P12110 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
COL6A2P12110 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
COL6A2P12110 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
COL6A2P12110 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
COL6A2P12110 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.86□□□□□ -0.03
COL6A2P12110 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A2P12110 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
COL6A2P12110 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL6A2P12110 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A2P12110 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC14.85□□□□□ -0.03
COL6A2P12110 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL6A2P12110 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A2P12110 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL6A2P12110 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.85□□□□□ -0.03
COL6A2P12110 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.85□□□□□ -0.03
COL6A2P12110 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A2P12110 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.85□□□□□ -0.03
COL6A2P12110 TPRX2P-201ENST00000535362 881 ntBASIC14.85□□□□□ -0.03
COL6A2P12110 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.85□□□□□ -0.03
COL6A2P12110 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.85□□□□□ -0.03
COL6A2P12110 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.85□□□□□ -0.03
COL6A2P12110 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.85□□□□□ -0.03
COL6A2P12110 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.85□□□□□ -0.03
COL6A2P12110 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 AP001160.2-201ENST00000596071 487 ntBASIC14.85□□□□□ -0.03
COL6A2P12110 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.85□□□□□ -0.03
COL6A2P12110 AL691403.2-201ENST00000618460 490 ntBASIC14.85□□□□□ -0.03
COL6A2P12110 AC007431.3-201ENST00000623221 587 ntBASIC14.85□□□□□ -0.03
COL6A2P12110 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.85□□□□□ -0.03
COL6A2P12110 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A2P12110 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms