Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SPTA1P02549 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.54□□□□□ -0.24
SPTA1P02549 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC13.54□□□□□ -0.24
SPTA1P02549 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC13.54□□□□□ -0.24
SPTA1P02549 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13.54□□□□□ -0.24
SPTA1P02549 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
SPTA1P02549 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 AC244197.1-201ENST00000456494 951 ntBASIC13.54□□□□□ -0.24
SPTA1P02549 EHF-205ENST00000527935 557 ntTSL 2 BASIC13.54□□□□□ -0.24
SPTA1P02549 AP000911.2-201ENST00000534330 502 ntBASIC13.54□□□□□ -0.24
SPTA1P02549 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 RBM8B-201ENST00000555532 525 ntBASIC13.54□□□□□ -0.24
SPTA1P02549 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC13.54□□□□□ -0.24
SPTA1P02549 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.54□□□□□ -0.24
SPTA1P02549 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
SPTA1P02549 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC13.54□□□□□ -0.24
SPTA1P02549 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC13.54□□□□□ -0.24
SPTA1P02549 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC13.54□□□□□ -0.24
SPTA1P02549 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC13.54□□□□□ -0.24
SPTA1P02549 AC004466.1-201ENST00000599515 1080 ntBASIC13.54□□□□□ -0.24
SPTA1P02549 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC13.54□□□□□ -0.24
SPTA1P02549 AL132780.4-201ENST00000624870 1135 ntBASIC13.54□□□□□ -0.24
SPTA1P02549 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
SPTA1P02549 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.54□□□□□ -0.24
SPTA1P02549 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC13.54□□□□□ -0.24
SPTA1P02549 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
SPTA1P02549 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SPTA1P02549 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC13.53□□□□□ -0.24
SPTA1P02549 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC13.53□□□□□ -0.24
SPTA1P02549 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC13.53□□□□□ -0.24
SPTA1P02549 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
SPTA1P02549 MIR5196-201ENST00000578146 115 ntBASIC13.53□□□□□ -0.24
SPTA1P02549 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
SPTA1P02549 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.53□□□□□ -0.24
SPTA1P02549 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.53□□□□□ -0.24
SPTA1P02549 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
SPTA1P02549 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
SPTA1P02549 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
SPTA1P02549 RAN-210ENST00000541630 1475 ntTSL 2 BASIC13.53□□□□□ -0.24
SPTA1P02549 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.53□□□□□ -0.24
SPTA1P02549 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 AL583805.1-201ENST00000391389 531 ntBASIC13.53□□□□□ -0.24
SPTA1P02549 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC13.53□□□□□ -0.24
SPTA1P02549 AC024293.1-201ENST00000467930 498 ntBASIC13.53□□□□□ -0.24
SPTA1P02549 CR383656.3-201ENST00000551315 183 ntBASIC13.53□□□□□ -0.24
SPTA1P02549 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC13.53□□□□□ -0.24
SPTA1P02549 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC13.53□□□□□ -0.24
SPTA1P02549 AC008825.2-201ENST00000603374 718 ntBASIC13.53□□□□□ -0.24
SPTA1P02549 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.53□□□□□ -0.24
SPTA1P02549 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.53□□□□□ -0.24
SPTA1P02549 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
SPTA1P02549 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
SPTA1P02549 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
SPTA1P02549 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SPTA1P02549 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC13.52□□□□□ -0.24
SPTA1P02549 ST20-AS1-201ENST00000560255 4223 ntBASIC13.52□□□□□ -0.24
SPTA1P02549 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SPTA1P02549 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SPTA1P02549 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.52□□□□□ -0.24
SPTA1P02549 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
SPTA1P02549 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
SPTA1P02549 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
SPTA1P02549 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SPTA1P02549 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.52□□□□□ -0.24
SPTA1P02549 BCAS2P2-201ENST00000425064 674 ntBASIC13.52□□□□□ -0.24
SPTA1P02549 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC13.52□□□□□ -0.24
SPTA1P02549 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.52□□□□□ -0.24
SPTA1P02549 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC13.52□□□□□ -0.24
SPTA1P02549 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC13.52□□□□□ -0.24
SPTA1P02549 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SPTA1P02549 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms