Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.16■□□□□ 0.54e-7■■■■■ 86.2
SF3B1O75533 MVB12A-203ENST00000526234 934 ntTSL 218.15■□□□□ 0.54e-7■■■■■ 86.2
SF3B1O75533 RNF220-214ENST00000484745 1951 ntTSL 518.15■□□□□ 0.55e-6■■■■■ 86.2
SF3B1O75533 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.12■□□□□ 0.494e-7■■■■■ 86.2
SF3B1O75533 SIRT6-205ENST00000595670 1057 ntTSL 518.08■□□□□ 0.494e-7■■■■■ 86.2
SF3B1O75533 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.04■□□□□ 0.484e-7■■■■■ 86.2
SF3B1O75533 DANCR-202ENST00000425653 823 ntTSL 1 (best)18.04■□□□□ 0.484e-7■■■■■ 86.2
SF3B1O75533 MIB2-220ENST00000506488 2997 ntTSL 518.02■□□□□ 0.488e-11■■■■■ 86.2
SF3B1O75533 MTG1-202ENST00000432508 953 ntTSL 217.98■□□□□ 0.474e-7■■■■■ 86.2
SF3B1O75533 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.98■□□□□ 0.474e-7■■■■■ 86.2
SF3B1O75533 SNX1-203ENST00000558040 774 ntTSL 517.98■□□□□ 0.474e-7■■■■■ 86.2
SF3B1O75533 TADA2A-213ENST00000620628 2211 ntTSL 517.93■□□□□ 0.464e-7■■■■■ 86.2
SF3B1O75533 STARD3-228ENST00000585214 566 ntTSL 417.93■□□□□ 0.464e-7■■■■■ 86.2
SF3B1O75533 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.464e-7■■■■■ 86.2
SF3B1O75533 ANKS3-220ENST00000591281 540 ntTSL 417.92■□□□□ 0.464e-7■■■■■ 86.2
SF3B1O75533 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.92■□□□□ 0.464e-7■■■■■ 86.2
SF3B1O75533 ATL3-202ENST00000535789 828 ntTSL 417.91■□□□□ 0.464e-7■■■■■ 86.2
SF3B1O75533 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.464e-7■■■■■ 86.2
SF3B1O75533 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.89■□□□□ 0.454e-7■■■■■ 86.2
SF3B1O75533 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.87■□□□□ 0.454e-7■■■■■ 86.2
SF3B1O75533 PI4KA-202ENST00000399213 1636 ntTSL 517.86■□□□□ 0.454e-7■■■■■ 86.2
SF3B1O75533 ATG16L1-207ENST00000417017 684 ntTSL 517.82■□□□□ 0.444e-7■■■■■ 86.2
SF3B1O75533 TRIP6-204ENST00000437505 875 ntTSL 317.8■□□□□ 0.444e-7■■■■■ 86.2
SF3B1O75533 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.79■□□□□ 0.444e-7■■■■■ 86.2
SF3B1O75533 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.444e-7■■■■■ 86.2
SF3B1O75533 EPC1-208ENST00000480402 907 ntTSL 217.77■□□□□ 0.444e-7■■■■■ 86.2
SF3B1O75533 AP4B1-206ENST00000432415 681 ntTSL 317.76■□□□□ 0.434e-7■■■■■ 86.2
SF3B1O75533 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.75■□□□□ 0.433e-8■■■■■ 86.2
SF3B1O75533 TBRG1-208ENST00000530731 1571 ntTSL 1 (best)17.75■□□□□ 0.434e-7■■■■■ 86.2
SF3B1O75533 WDR59-211ENST00000564859 488 ntTSL 317.73■□□□□ 0.434e-7■■■■■ 86.2
SF3B1O75533 PDXK-208ENST00000461123 637 ntTSL 317.72■□□□□ 0.434e-7■■■■■ 86.2
SF3B1O75533 ATG16L1-208ENST00000419681 644 ntTSL 517.71■□□□□ 0.424e-7■■■■■ 86.2
SF3B1O75533 WDR5-202ENST00000608739 577 ntTSL 417.68■□□□□ 0.424e-7■■■■■ 86.2
SF3B1O75533 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.67■□□□□ 0.421e-6■■■■■ 86.2
SF3B1O75533 NCK1-205ENST00000476286 557 ntTSL 417.64■□□□□ 0.414e-7■■■■■ 86.2
SF3B1O75533 TBRG1-207ENST00000529543 2142 ntTSL 1 (best)17.62■□□□□ 0.414e-7■■■■■ 86.2
SF3B1O75533 DNAAF5-205ENST00000440747 2350 ntAPPRIS ALT2 TSL 217.59■□□□□ 0.418e-6■■■■■ 86.2
SF3B1O75533 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.59■□□□□ 0.414e-7■■■■■ 86.2
SF3B1O75533 RFWD3-207ENST00000572990 599 ntTSL 417.58■□□□□ 0.44e-7■■■■■ 86.2
SF3B1O75533 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.42e-6■■■■■ 86.2
SF3B1O75533 KIAA1524-205ENST00000487834 2014 ntTSL 1 (best)17.55■□□□□ 0.44e-7■■■■■ 86.2
SF3B1O75533 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.43e-13■■■■■ 86.2
SF3B1O75533 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.5■□□□□ 0.394e-7■■■■■ 86.2
SF3B1O75533 ATG16L1-210ENST00000444735 691 ntTSL 517.49■□□□□ 0.394e-7■■■■■ 86.2
SF3B1O75533 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.398e-11■■■■■ 86.2
SF3B1O75533 G3BP2-206ENST00000503660 1071 ntTSL 517.46■□□□□ 0.384e-7■■■■■ 86.2
SF3B1O75533 STARD3-225ENST00000583718 550 ntTSL 417.43■□□□□ 0.384e-7■■■■■ 86.2
SF3B1O75533 VPS26B-206ENST00000531741 2073 ntTSL 217.41■□□□□ 0.384e-7■■■■■ 86.2
SF3B1O75533 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.378e-6■■■■■ 86.2
SF3B1O75533 B3GNTL1-205ENST00000571394 774 ntTSL 317.33■□□□□ 0.364e-7■■■■■ 86.2
SF3B1O75533 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.364e-7■■■■■ 86.2
SF3B1O75533 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.364e-7■■■■■ 86.2
SF3B1O75533 KPTN-207ENST00000600271 743 ntTSL 517.31■□□□□ 0.364e-7■■■■■ 86.2
SF3B1O75533 HIKESHI-202ENST00000528004 1409 ntTSL 217.3■□□□□ 0.364e-7■■■■■ 86.2
SF3B1O75533 STARD3-204ENST00000460894 584 ntTSL 517.26■□□□□ 0.354e-7■■■■■ 86.2
SF3B1O75533 EIF2B2-202ENST00000553401 896 ntTSL 517.24■□□□□ 0.354e-7■■■■■ 86.2
SF3B1O75533 ARF1-202ENST00000469235 678 ntTSL 317.23■□□□□ 0.354e-7■■■■■ 86.2
SF3B1O75533 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.19■□□□□ 0.345e-6■■■■■ 86.2
SF3B1O75533 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.344e-7■■■■■ 86.2
SF3B1O75533 PEX5-215ENST00000542539 848 ntTSL 517.17■□□□□ 0.344e-7■■■■■ 86.2
SF3B1O75533 PDXK-211ENST00000468392 1094 ntTSL 217.17■□□□□ 0.344e-7■■■■■ 86.2
SF3B1O75533 NEDD8-MDP1-204ENST00000605847 758 ntTSL 517.17■□□□□ 0.344e-7■■■■■ 86.2
SF3B1O75533 PRPF40A-212ENST00000545856 1358 ntTSL 1 (best)17.15■□□□□ 0.344e-7■■■■■ 86.2
SF3B1O75533 RHOT1-215ENST00000583994 3289 ntTSL 217.13■□□□□ 0.332e-6■■■■■ 86.2
SF3B1O75533 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.12■□□□□ 0.334e-7■■■■■ 86.2
SF3B1O75533 SEC13-210ENST00000428626 567 ntTSL 317.1■□□□□ 0.334e-7■■■■■ 86.2
SF3B1O75533 BAIAP2L1-203ENST00000473569 639 ntTSL 417.1■□□□□ 0.334e-7■■■■■ 86.2
SF3B1O75533 SEC13-213ENST00000445064 669 ntTSL 517.04■□□□□ 0.324e-7■■■■■ 86.2
SF3B1O75533 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.324e-7■■■■■ 86.2
SF3B1O75533 DEAF1-207ENST00000527170 1623 ntTSL 1 (best)17.03■□□□□ 0.324e-7■■■■■ 86.2
SF3B1O75533 RPAP2-202ENST00000484158 1038 ntTSL 217■□□□□ 0.314e-7■■■■■ 86.2
SF3B1O75533 ARF1-212ENST00000497165 675 ntTSL 316.99■□□□□ 0.314e-7■■■■■ 86.2
SF3B1O75533 DVL2-207ENST00000574642 664 ntTSL 516.99■□□□□ 0.313e-8■■■■■ 86.2
SF3B1O75533 ARF1-203ENST00000470558 820 ntTSL 216.99■□□□□ 0.314e-7■■■■■ 86.2
SF3B1O75533 PSMD13-213ENST00000533717 670 ntTSL 216.98■□□□□ 0.314e-7■■■■■ 86.2
SF3B1O75533 EIF2B2-206ENST00000556028 831 ntTSL 516.96■□□□□ 0.34e-7■■■■■ 86.2
SF3B1O75533 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.38e-11■■■■■ 86.2
SF3B1O75533 PEX5-218ENST00000545220 553 ntTSL 416.94■□□□□ 0.34e-7■■■■■ 86.2
SF3B1O75533 HIKESHI-205ENST00000531485 715 ntTSL 216.83■□□□□ 0.284e-7■■■■■ 86.2
SF3B1O75533 TAF1B-207ENST00000480197 554 ntTSL 416.83■□□□□ 0.284e-7■■■■■ 86.2
SF3B1O75533 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.82■□□□□ 0.284e-7■■■■■ 86.2
SF3B1O75533 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.74■□□□□ 0.274e-7■■■■■ 86.2
SF3B1O75533 PIKFYVE-206ENST00000443896 3282 ntTSL 1 (best)16.73■□□□□ 0.275e-6■■■■■ 86.2
SF3B1O75533 PFKFB4-206ENST00000422701 636 ntTSL 316.7■□□□□ 0.263e-8■■■■■ 86.2
SF3B1O75533 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.264e-7■■■■■ 86.2
SF3B1O75533 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.67■□□□□ 0.264e-7■■■■■ 86.2
SF3B1O75533 SEC13-206ENST00000397102 582 ntTSL 316.67■□□□□ 0.264e-7■■■■■ 86.2
SF3B1O75533 KCTD20-207ENST00000481911 1494 ntTSL 216.59■□□□□ 0.254e-7■■■■■ 86.2
SF3B1O75533 ANKS3-229ENST00000593120 572 ntTSL 416.57■□□□□ 0.244e-7■■■■■ 86.2
SF3B1O75533 ANKS3-209ENST00000587005 566 ntTSL 416.57■□□□□ 0.244e-7■■■■■ 86.2
SF3B1O75533 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.241e-6■■■■■ 86.2
SF3B1O75533 CCNL1-222ENST00000479596 883 ntTSL 316.49■□□□□ 0.233e-8■■■■■ 86.2
SF3B1O75533 AC004922.1-202ENST00000441989 1702 ntTSL 216.49■□□□□ 0.234e-7■■■■■ 86.2
SF3B1O75533 SLC38A5-211ENST00000615300 797 ntTSL 316.46■□□□□ 0.234e-7■■■■■ 86.2
SF3B1O75533 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.46■□□□□ 0.235e-6■■■■■ 86.2
SF3B1O75533 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.4■□□□□ 0.222e-6■■■■■ 86.2
SF3B1O75533 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.37■□□□□ 0.214e-7■■■■■ 86.2
SF3B1O75533 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.214e-7■■■■■ 86.2
SF3B1O75533 ARF1-210ENST00000482962 597 ntTSL 316.31■□□□□ 0.24e-7■■■■■ 86.2
SF3B1O75533 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.24e-7■■■■■ 86.2
Retrieved 100 of 46,956 protein–RNA pairs in 1610.1 ms