Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
ATG4BQ9Y4P1 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 AC099063.4-201ENST00000641099 1602 ntBASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 AC140479.7-201ENST00000636301 2332 ntBASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 AC092933.1-201ENST00000393644 945 ntBASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 BTNL10-201ENST00000595971 695 ntBASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 AC233724.13-201ENST00000598383 410 ntBASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
ATG4BQ9Y4P1 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 MYO15B-237ENST00000642007 4893 ntBASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms