Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 AL512430.1-201ENST00000392575 860 ntBASIC16.3■□□□□ 0.2
HIPK3Q9H422 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 MIR4649-201ENST00000582839 64 ntBASIC16.3■□□□□ 0.2
HIPK3Q9H422 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.3■□□□□ 0.2
HIPK3Q9H422 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIPK3Q9H422 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 AC023824.1-201ENST00000562945 2975 ntBASIC16.29■□□□□ 0.2
HIPK3Q9H422 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 AC005632.3-201ENST00000605544 308 ntBASIC16.29■□□□□ 0.2
HIPK3Q9H422 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 AC027601.3-201ENST00000622907 509 ntBASIC16.29■□□□□ 0.2
HIPK3Q9H422 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.29■□□□□ 0.2
HIPK3Q9H422 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIPK3Q9H422 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 CYP2T1P-202ENST00000641596 2535 ntBASIC16.28■□□□□ 0.2
HIPK3Q9H422 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIPK3Q9H422 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIPK3Q9H422 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HIPK3Q9H422 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIPK3Q9H422 AL136379.1-201ENST00000623471 2642 ntBASIC16.28■□□□□ 0.2
HIPK3Q9H422 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIPK3Q9H422 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 AL157407.1-201ENST00000435784 904 ntBASIC16.28■□□□□ 0.2
HIPK3Q9H422 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HIPK3Q9H422 CICP12-201ENST00000455801 843 ntBASIC16.28■□□□□ 0.2
HIPK3Q9H422 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 AC006122.1-201ENST00000493323 440 ntBASIC16.28■□□□□ 0.2
HIPK3Q9H422 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC16.28■□□□□ 0.2
HIPK3Q9H422 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms