Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC002472.4-201ENST00000641915 272 ntBASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 AC138035.3-201ENST00000622706 2791 ntBASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 AC007950.2-201ENST00000615045 2347 ntBASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 AL109954.1-202ENST00000564051 2148 ntBASIC18.77■□□□□ 0.6
SHANK3Q9BYB0 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 AQP7P5-201ENST00000428759 1049 ntBASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 AQP7P4-201ENST00000447083 1042 ntBASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 AQP7P2-201ENST00000453967 1041 ntBASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 RPS23-207ENST00000511844 530 ntTSL 2 BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 CMC2-204ENST00000562713 573 ntTSL 3 BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 CMC2-209ENST00000565108 399 ntTSL 2 BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 AQP7P3-201ENST00000624547 1041 ntBASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHANK3Q9BYB0 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 AC117503.4-201ENST00000623229 1418 ntBASIC18.76■□□□□ 0.59
SHANK3Q9BYB0 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 AC091951.1-201ENST00000512854 2465 ntBASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 FTX-216ENST00000638985 1367 ntTSL 5 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 AC244197.1-201ENST00000456494 951 ntBASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 AC013553.1-201ENST00000560906 267 ntBASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 COX5A-205ENST00000568517 582 ntTSL 3 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK3Q9BYB0 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 RNVU1-8-201ENST00000364272 125 ntBASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 EEF1DP2-201ENST00000433698 843 ntBASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 AC018638.5-201ENST00000450885 754 ntBASIC18.74■□□□□ 0.59
SHANK3Q9BYB0 AL135901.1-201ENST00000451812 333 ntBASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms