Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC12.79□□□□□ -0.36
COL12A1Q99715 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC12.79□□□□□ -0.36
COL12A1Q99715 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC12.79□□□□□ -0.36
COL12A1Q99715 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
COL12A1Q99715 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC12.78□□□□□ -0.36
COL12A1Q99715 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC12.78□□□□□ -0.36
COL12A1Q99715 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.78□□□□□ -0.36
COL12A1Q99715 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12.78□□□□□ -0.36
COL12A1Q99715 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
COL12A1Q99715 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
COL12A1Q99715 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC12.78□□□□□ -0.36
COL12A1Q99715 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
COL12A1Q99715 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 OR51A9P-201ENST00000422578 911 ntBASIC12.78□□□□□ -0.36
COL12A1Q99715 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
COL12A1Q99715 CDCA4P4-201ENST00000435216 680 ntBASIC12.78□□□□□ -0.36
COL12A1Q99715 XBP1P1-201ENST00000436573 652 ntBASIC12.78□□□□□ -0.36
COL12A1Q99715 RHEB-207ENST00000496004 744 ntTSL 2 BASIC12.78□□□□□ -0.36
COL12A1Q99715 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
COL12A1Q99715 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC12.78□□□□□ -0.36
COL12A1Q99715 MIR4640-201ENST00000581824 90 ntBASIC12.78□□□□□ -0.36
COL12A1Q99715 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC12.78□□□□□ -0.36
COL12A1Q99715 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC12.78□□□□□ -0.36
COL12A1Q99715 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC12.78□□□□□ -0.36
COL12A1Q99715 LINC02447-202ENST00000501888 2146 ntBASIC12.78□□□□□ -0.36
COL12A1Q99715 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
COL12A1Q99715 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
COL12A1Q99715 PYY2-201ENST00000315776 282 ntBASIC12.78□□□□□ -0.36
COL12A1Q99715 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
COL12A1Q99715 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC12.78□□□□□ -0.36
COL12A1Q99715 RN7SL288P-201ENST00000490496 291 ntBASIC12.78□□□□□ -0.36
COL12A1Q99715 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC12.78□□□□□ -0.36
COL12A1Q99715 GPX3-202ENST00000517973 612 ntTSL 3 BASIC12.78□□□□□ -0.36
COL12A1Q99715 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC12.78□□□□□ -0.36
COL12A1Q99715 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC12.78□□□□□ -0.36
COL12A1Q99715 RN7SL602P-201ENST00000578326 324 ntBASIC12.78□□□□□ -0.36
COL12A1Q99715 RN7SL718P-201ENST00000581254 303 ntBASIC12.78□□□□□ -0.36
COL12A1Q99715 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC12.78□□□□□ -0.36
COL12A1Q99715 PRMT1P1-201ENST00000604252 1009 ntBASIC12.78□□□□□ -0.36
COL12A1Q99715 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC12.78□□□□□ -0.36
COL12A1Q99715 AL022334.2-201ENST00000610000 484 ntBASIC12.78□□□□□ -0.36
COL12A1Q99715 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC12.78□□□□□ -0.36
COL12A1Q99715 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
COL12A1Q99715 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 API5-203ENST00000455725 2257 ntTSL 2 BASIC12.78□□□□□ -0.36
COL12A1Q99715 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
COL12A1Q99715 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
COL12A1Q99715 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC12.77□□□□□ -0.36
COL12A1Q99715 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL12A1Q99715 CDK4P1-201ENST00000454213 828 ntBASIC12.77□□□□□ -0.36
COL12A1Q99715 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC12.77□□□□□ -0.36
COL12A1Q99715 AC026412.1-206ENST00000502273 206 ntBASIC12.77□□□□□ -0.36
COL12A1Q99715 ALG3P1-201ENST00000508806 1114 ntBASIC12.77□□□□□ -0.36
COL12A1Q99715 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC12.77□□□□□ -0.36
COL12A1Q99715 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL12A1Q99715 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC12.77□□□□□ -0.36
COL12A1Q99715 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL12A1Q99715 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL12A1Q99715 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL12A1Q99715 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL12A1Q99715 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL12A1Q99715 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL12A1Q99715 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC12.77□□□□□ -0.36
COL12A1Q99715 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC12.77□□□□□ -0.36
COL12A1Q99715 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL12A1Q99715 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
COL12A1Q99715 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
COL12A1Q99715 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
COL12A1Q99715 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
COL12A1Q99715 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
COL12A1Q99715 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.37
COL12A1Q99715 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.37
COL12A1Q99715 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
COL12A1Q99715 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
COL12A1Q99715 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
COL12A1Q99715 GUSBP10-201ENST00000417412 665 ntBASIC12.77□□□□□ -0.37
COL12A1Q99715 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC12.77□□□□□ -0.37
COL12A1Q99715 AL356000.1-201ENST00000441073 1238 ntBASIC12.77□□□□□ -0.37
COL12A1Q99715 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms