Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 BX284668.4-201ENST00000453917 508 ntBASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 AKR7A2P1-201ENST00000460134 915 ntBASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 AC021723.1-201ENST00000486306 515 ntBASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 AC244452.3-201ENST00000636814 210 ntBASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC60Q8IWA6 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 AJ011931.1-201ENST00000618749 2492 ntBASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 RBM38-204ENST00000371219 760 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 BCYRN1-201ENST00000418539 200 ntBASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 KLF2P1-201ENST00000447438 1042 ntBASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 HIST2H2BC-201ENST00000498492 580 ntBASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 SCARNA20.5-201ENST00000516991 142 ntBASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 HNRNPA1P36-201ENST00000521313 955 ntBASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 AC100827.2-201ENST00000563214 1194 ntBASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 AC020914.3-201ENST00000594712 304 ntBASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 BNIP3P13-201ENST00000599968 566 ntBASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 AC138028.6-201ENST00000616106 1482 ntBASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC60Q8IWA6 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
CCDC60Q8IWA6 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC60Q8IWA6 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.58■□□□□ 0.25
CCDC60Q8IWA6 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC60Q8IWA6 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC60Q8IWA6 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC60Q8IWA6 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.58■□□□□ 0.25
CCDC60Q8IWA6 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC60Q8IWA6 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 FNTAP2-201ENST00000430308 634 ntBASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 CALR4P-201ENST00000431943 946 ntBASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 ACTG1P17-201ENST00000558391 1119 ntBASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 AC008825.2-201ENST00000603374 718 ntBASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 AL023803.2-201ENST00000620080 638 ntBASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms