Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 BTBD6P1-201ENST00000412176 1267 ntBASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC144BQ3MJ40 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 AL591846.1-201ENST00000451736 433 ntBASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 ACR-203ENST00000529621 708 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 GPR39-203ENST00000622084 900 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 AC006453.4-201ENST00000636949 1252 ntBASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC144BQ3MJ40 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 RNU1-114P-201ENST00000365297 166 ntBASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 KLF2P2-201ENST00000416807 1039 ntBASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC144BQ3MJ40 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms