Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 AC012441.2-201ENST00000444843 739 ntBASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 AC006122.1-201ENST00000493323 440 ntBASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 RTN3P1-201ENST00000536295 711 ntBASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 AL157813.1-201ENST00000612996 587 ntBASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 AC027601.3-201ENST00000622907 509 ntBASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 TMBIM7P-202ENST00000641474 1516 ntBASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 LINC01101-201ENST00000622953 1884 ntBASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM1Q2M3G4 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 AL008707.1-201ENST00000422498 534 ntBASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 AC069218.1-201ENST00000435269 762 ntBASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 ALG3P1-201ENST00000508806 1114 ntBASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 FADS2-212ENST00000522639 360 ntTSL 5 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 FADS2-215ENST00000574708 385 ntTSL 3 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 NAT9-224ENST00000583757 583 ntTSL 3 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 AC008825.2-201ENST00000603374 718 ntBASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 AC012044.1-201ENST00000603431 297 ntBASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 U62317.3-201ENST00000608319 855 ntBASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 AL353770.1-201ENST00000614915 403 ntBASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHROOM1Q2M3G4 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHROOM1Q2M3G4 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
SHROOM1Q2M3G4 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHROOM1Q2M3G4 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SHROOM1Q2M3G4 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms