Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC232323.1-201ENST00000540724 2099 ntBASIC13.48□□□□□ -0.25
CLRN1P58418 AC015656.1-201ENST00000624209 3578 ntBASIC13.48□□□□□ -0.25
CLRN1P58418 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.48□□□□□ -0.25
CLRN1P58418 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.48□□□□□ -0.25
CLRN1P58418 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 NSL1-201ENST00000366976 722 ntTSL 2 BASIC13.48□□□□□ -0.25
CLRN1P58418 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CLRN1P58418 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CLRN1P58418 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
CLRN1P58418 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.48□□□□□ -0.25
CLRN1P58418 KRT18P25-201ENST00000508931 1278 ntBASIC13.48□□□□□ -0.25
CLRN1P58418 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC13.48□□□□□ -0.25
CLRN1P58418 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC13.48□□□□□ -0.25
CLRN1P58418 ENPP7P5-201ENST00000541031 1031 ntBASIC13.48□□□□□ -0.25
CLRN1P58418 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.48□□□□□ -0.25
CLRN1P58418 CU634019.7-201ENST00000624153 1185 ntBASIC13.48□□□□□ -0.25
CLRN1P58418 FP236241.2-201ENST00000624906 1185 ntBASIC13.48□□□□□ -0.25
CLRN1P58418 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.48□□□□□ -0.25
CLRN1P58418 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CLRN1P58418 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.48□□□□□ -0.25
CLRN1P58418 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.48□□□□□ -0.25
CLRN1P58418 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.47□□□□□ -0.25
CLRN1P58418 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 PEG13-201ENST00000631594 5667 ntBASIC13.47□□□□□ -0.25
CLRN1P58418 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
CLRN1P58418 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 AC018529.2-202ENST00000611482 3087 ntBASIC13.47□□□□□ -0.25
CLRN1P58418 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.47□□□□□ -0.25
CLRN1P58418 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.47□□□□□ -0.25
CLRN1P58418 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CLRN1P58418 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 AC022616.1-201ENST00000518688 554 ntBASIC13.47□□□□□ -0.25
CLRN1P58418 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC13.47□□□□□ -0.25
CLRN1P58418 POLD4-211ENST00000539074 714 ntTSL 3 BASIC13.47□□□□□ -0.25
CLRN1P58418 GREM1-201ENST00000560677 623 ntTSL 4 BASIC13.47□□□□□ -0.25
CLRN1P58418 CTBP2P3-201ENST00000585629 1255 ntBASIC13.47□□□□□ -0.25
CLRN1P58418 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.47□□□□□ -0.25
CLRN1P58418 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.47□□□□□ -0.25
CLRN1P58418 PRSS30P-206ENST00000641773 873 ntBASIC13.47□□□□□ -0.25
CLRN1P58418 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
CLRN1P58418 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 AC018442.1-201ENST00000421439 2061 ntBASIC13.47□□□□□ -0.25
CLRN1P58418 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.47□□□□□ -0.25
CLRN1P58418 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.47□□□□□ -0.25
CLRN1P58418 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CLRN1P58418 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
CLRN1P58418 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
CLRN1P58418 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC13.47□□□□□ -0.25
CLRN1P58418 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
CLRN1P58418 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CLRN1P58418 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CLRN1P58418 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.47□□□□□ -0.25
CLRN1P58418 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLRN1P58418 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms