Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.81□□□□□ -0.04
PKNOX1P55347 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
PKNOX1P55347 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 AC092135.3-201ENST00000624151 1846 ntBASIC14.81□□□□□ -0.04
PKNOX1P55347 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
PKNOX1P55347 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
PKNOX1P55347 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
PKNOX1P55347 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 MIR1233-2-201ENST00000408138 82 ntBASIC14.81□□□□□ -0.04
PKNOX1P55347 MIR1233-1-201ENST00000408722 82 ntBASIC14.81□□□□□ -0.04
PKNOX1P55347 TREML5P-201ENST00000421694 576 ntBASIC14.81□□□□□ -0.04
PKNOX1P55347 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.81□□□□□ -0.04
PKNOX1P55347 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.81□□□□□ -0.04
PKNOX1P55347 AC009477.1-201ENST00000452936 217 ntBASIC14.81□□□□□ -0.04
PKNOX1P55347 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.81□□□□□ -0.04
PKNOX1P55347 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.81□□□□□ -0.04
PKNOX1P55347 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.81□□□□□ -0.04
PKNOX1P55347 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.81□□□□□ -0.04
PKNOX1P55347 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.81□□□□□ -0.04
PKNOX1P55347 AL391069.4-201ENST00000609583 481 ntBASIC14.81□□□□□ -0.04
PKNOX1P55347 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.81□□□□□ -0.04
PKNOX1P55347 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
PKNOX1P55347 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
PKNOX1P55347 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.81□□□□□ -0.04
PKNOX1P55347 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.81□□□□□ -0.04
PKNOX1P55347 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.81□□□□□ -0.04
PKNOX1P55347 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.81□□□□□ -0.04
PKNOX1P55347 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.8□□□□□ -0.04
PKNOX1P55347 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.8□□□□□ -0.04
PKNOX1P55347 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.8□□□□□ -0.04
PKNOX1P55347 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.8□□□□□ -0.04
PKNOX1P55347 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
PKNOX1P55347 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.8□□□□□ -0.04
PKNOX1P55347 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.8□□□□□ -0.04
PKNOX1P55347 AC005252.3-201ENST00000623855 2258 ntBASIC14.8□□□□□ -0.04
PKNOX1P55347 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.8□□□□□ -0.04
PKNOX1P55347 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
PKNOX1P55347 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.8□□□□□ -0.04
PKNOX1P55347 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.8□□□□□ -0.04
PKNOX1P55347 TSSK5P-201ENST00000423978 907 ntBASIC14.8□□□□□ -0.04
PKNOX1P55347 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.8□□□□□ -0.04
PKNOX1P55347 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.8□□□□□ -0.04
PKNOX1P55347 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.8□□□□□ -0.04
PKNOX1P55347 AL691403.2-201ENST00000618460 490 ntBASIC14.8□□□□□ -0.04
PKNOX1P55347 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
PKNOX1P55347 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.8□□□□□ -0.04
PKNOX1P55347 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.8□□□□□ -0.04
PKNOX1P55347 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.8□□□□□ -0.04
PKNOX1P55347 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.8□□□□□ -0.04
PKNOX1P55347 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
PKNOX1P55347 MBLAC2-202ENST00000514906 1936 ntBASIC14.8□□□□□ -0.04
PKNOX1P55347 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 AC152010.1-201ENST00000415779 2006 ntBASIC14.8□□□□□ -0.04
PKNOX1P55347 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PKNOX1P55347 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.8□□□□□ -0.04
PKNOX1P55347 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.79□□□□□ -0.04
PKNOX1P55347 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.79□□□□□ -0.04
PKNOX1P55347 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.79□□□□□ -0.04
PKNOX1P55347 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
PKNOX1P55347 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms